Result of FASTA (omim) for
pFN21AE6541
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6541, 91 aa
1>>>pF1KE6541 91 - 91 aa - 91 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9367+/-0.000407; mu= 10.2515+/- 0.025
mean_var=51.9067+/-10.911, 0's: 0 Z-trim(110.3): 24 B-trim: 401 in 1/53
Lambda= 0.178017
statistics sampled from 18630 (18646) to 18630 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.589), E-opt: 0.2 (0.219), width: 16
Scan time: 3.460
The best scores are: opt bits E(85289)
NP_002091 (OMIM: 111740,611162) glycophorin-B isof ( 91) 534 144.8 1.8e-35
XP_011530205 (OMIM: 111740,611162) PREDICTED: glyc ( 96) 532 144.3 2.7e-35
XP_011530207 (OMIM: 111740,611162) PREDICTED: glyc ( 82) 465 127.1 3.5e-30
XP_011530206 (OMIM: 111740,611162) PREDICTED: glyc ( 87) 460 125.8 9e-30
XP_016863626 (OMIM: 111740,611162) PREDICTED: glyc ( 65) 393 108.6 1.1e-24
NP_001291311 (OMIM: 111740,611162) glycophorin-B i ( 65) 390 107.8 1.8e-24
NP_002093 (OMIM: 138590) glycophorin-E precursor [ ( 78) 276 78.5 1.4e-15
NP_941391 (OMIM: 138590) glycophorin-E precursor [ ( 78) 276 78.5 1.4e-15
XP_016863629 (OMIM: 138590) PREDICTED: glycophorin ( 78) 276 78.5 1.4e-15
XP_016863628 (OMIM: 138590) PREDICTED: glycophorin ( 78) 276 78.5 1.4e-15
NP_001295116 (OMIM: 111300,611162) glycophorin-A i ( 137) 254 73.0 1.1e-13
XP_016863623 (OMIM: 111300,611162) PREDICTED: glyc ( 145) 254 73.0 1.2e-13
NP_002090 (OMIM: 111300,611162) glycophorin-A isof ( 150) 254 73.0 1.2e-13
XP_016863625 (OMIM: 111300,611162) PREDICTED: glyc ( 112) 237 68.6 2e-12
NP_001295119 (OMIM: 111300,611162) glycophorin-A i ( 117) 237 68.6 2e-12
XP_016863624 (OMIM: 111300,611162) PREDICTED: glyc ( 124) 178 53.5 7.8e-08
>>NP_002091 (OMIM: 111740,611162) glycophorin-B isoform (91 aa)
initn: 534 init1: 534 opt: 534 Z-score: 757.9 bits: 144.8 E(85289): 1.8e-35
Smith-Waterman score: 534; 98.9% identity (100.0% similar) in 91 aa overlap (1-91:1-91)
10 20 30 40 50 60
pF1KE6 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP
10 20 30 40 50 60
70 80 90
pF1KE6 VVIILIILCVMAGIIGTILLISYSIRRLIKA
:::::::::::::::::::::::.:::::::
NP_002 VVIILIILCVMAGIIGTILLISYTIRRLIKA
70 80 90
>>XP_011530205 (OMIM: 111740,611162) PREDICTED: glycopho (96 aa)
initn: 532 init1: 532 opt: 532 Z-score: 754.8 bits: 144.3 E(85289): 2.7e-35
Smith-Waterman score: 532; 100.0% identity (100.0% similar) in 90 aa overlap (1-90:1-90)
10 20 30 40 50 60
pF1KE6 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP
10 20 30 40 50 60
70 80 90
pF1KE6 VVIILIILCVMAGIIGTILLISYSIRRLIKA
::::::::::::::::::::::::::::::
XP_011 VVIILIILCVMAGIIGTILLISYSIRRLIKVTALNV
70 80 90
>>XP_011530207 (OMIM: 111740,611162) PREDICTED: glycopho (82 aa)
initn: 465 init1: 465 opt: 465 Z-score: 662.8 bits: 127.1 E(85289): 3.5e-30
Smith-Waterman score: 465; 100.0% identity (100.0% similar) in 79 aa overlap (13-91:4-82)
10 20 30 40 50 60
pF1KE6 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP
::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSKEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP
10 20 30 40 50
70 80 90
pF1KE6 VVIILIILCVMAGIIGTILLISYSIRRLIKA
:::::::::::::::::::::::::::::::
XP_011 VVIILIILCVMAGIIGTILLISYSIRRLIKA
60 70 80
>>XP_011530206 (OMIM: 111740,611162) PREDICTED: glycopho (87 aa)
initn: 460 init1: 460 opt: 460 Z-score: 655.5 bits: 125.8 E(85289): 9e-30
Smith-Waterman score: 460; 100.0% identity (100.0% similar) in 78 aa overlap (13-90:4-81)
10 20 30 40 50 60
pF1KE6 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP
::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSKEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP
10 20 30 40 50
70 80 90
pF1KE6 VVIILIILCVMAGIIGTILLISYSIRRLIKA
::::::::::::::::::::::::::::::
XP_011 VVIILIILCVMAGIIGTILLISYSIRRLIKVTALNV
60 70 80
>>XP_016863626 (OMIM: 111740,611162) PREDICTED: glycopho (65 aa)
initn: 393 init1: 393 opt: 393 Z-score: 564.5 bits: 108.6 E(85289): 1.1e-24
Smith-Waterman score: 393; 100.0% identity (100.0% similar) in 65 aa overlap (27-91:1-65)
10 20 30 40 50 60
pF1KE6 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP
::::::::::::::::::::::::::::::::::
XP_016 MHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP
10 20 30
70 80 90
pF1KE6 VVIILIILCVMAGIIGTILLISYSIRRLIKA
:::::::::::::::::::::::::::::::
XP_016 VVIILIILCVMAGIIGTILLISYSIRRLIKA
40 50 60
>>NP_001291311 (OMIM: 111740,611162) glycophorin-B isofo (65 aa)
initn: 390 init1: 390 opt: 390 Z-score: 560.3 bits: 107.8 E(85289): 1.8e-24
Smith-Waterman score: 390; 98.5% identity (100.0% similar) in 65 aa overlap (27-91:1-65)
10 20 30 40 50 60
pF1KE6 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP
::::::::::::::::::::::::::::::::::
NP_001 MHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP
10 20 30
70 80 90
pF1KE6 VVIILIILCVMAGIIGTILLISYSIRRLIKA
:::::::::::::::::::::::.:::::::
NP_001 VVIILIILCVMAGIIGTILLISYTIRRLIKA
40 50 60
>>NP_002093 (OMIM: 138590) glycophorin-E precursor [Homo (78 aa)
initn: 298 init1: 237 opt: 276 Z-score: 400.9 bits: 78.5 E(85289): 1.4e-15
Smith-Waterman score: 276; 65.1% identity (76.7% similar) in 86 aa overlap (1-86:1-78)
10 20 30 40 50 60
pF1KE6 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP
:::::::::::: :::::: ::: :::::::::::::::::::::: : :.. ..
NP_002 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGIT--LINWWA----
10 20 30 40 50
70 80 90
pF1KE6 VVIILIILCVMAGIIGTILLISYSIRRLIKA
. .:. :: ..: :.:::: ::
NP_002 --MARVIFEVMLVVVGMIILISYCIR
60 70
>>NP_941391 (OMIM: 138590) glycophorin-E precursor [Homo (78 aa)
initn: 298 init1: 237 opt: 276 Z-score: 400.9 bits: 78.5 E(85289): 1.4e-15
Smith-Waterman score: 276; 65.1% identity (76.7% similar) in 86 aa overlap (1-86:1-78)
10 20 30 40 50 60
pF1KE6 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP
:::::::::::: :::::: ::: :::::::::::::::::::::: : :.. ..
NP_941 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGIT--LINWWA----
10 20 30 40 50
70 80 90
pF1KE6 VVIILIILCVMAGIIGTILLISYSIRRLIKA
. .:. :: ..: :.:::: ::
NP_941 --MARVIFEVMLVVVGMIILISYCIR
60 70
>>XP_016863629 (OMIM: 138590) PREDICTED: glycophorin-E i (78 aa)
initn: 298 init1: 237 opt: 276 Z-score: 400.9 bits: 78.5 E(85289): 1.4e-15
Smith-Waterman score: 276; 65.1% identity (76.7% similar) in 86 aa overlap (1-86:1-78)
10 20 30 40 50 60
pF1KE6 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP
:::::::::::: :::::: ::: :::::::::::::::::::::: : :.. ..
XP_016 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGIT--LINWWA----
10 20 30 40 50
70 80 90
pF1KE6 VVIILIILCVMAGIIGTILLISYSIRRLIKA
. .:. :: ..: :.:::: ::
XP_016 --MARVIFEVMLVVVGMIILISYCIR
60 70
>>XP_016863628 (OMIM: 138590) PREDICTED: glycophorin-E i (78 aa)
initn: 298 init1: 237 opt: 276 Z-score: 400.9 bits: 78.5 E(85289): 1.4e-15
Smith-Waterman score: 276; 65.1% identity (76.7% similar) in 86 aa overlap (1-86:1-78)
10 20 30 40 50 60
pF1KE6 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP
:::::::::::: :::::: ::: :::::::::::::::::::::: : :.. ..
XP_016 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGIT--LINWWA----
10 20 30 40 50
70 80 90
pF1KE6 VVIILIILCVMAGIIGTILLISYSIRRLIKA
. .:. :: ..: :.:::: ::
XP_016 --MARVIFEVMLVVVGMIILISYCIR
60 70
91 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:14:57 2016 done: Tue Nov 8 14:14:57 2016
Total Scan time: 3.460 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]