FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6526, 150 aa
  1>>>pF1KE6526 150 - 150 aa - 150 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4741+/-0.000589; mu= 11.1148+/- 0.036
 mean_var=62.3138+/-12.638, 0's: 0 Z-trim(112.3): 12  B-trim: 443 in 1/49
 Lambda= 0.162473
 statistics sampled from 13032 (13044) to 13032 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.401), width:  16
 Scan time:  1.290

The best scores are:                                      opt bits E(32554)
CCDS3961.1 HSPB3 gene_id:8988|Hs108|chr5           ( 150) 1001 242.2   9e-65
CCDS8352.1 HSPB2 gene_id:3316|Hs108|chr11          ( 182)  240 63.9 5.3e-11


>>CCDS3961.1 HSPB3 gene_id:8988|Hs108|chr5                (150 aa)
 initn: 1001 init1: 1001 opt: 1001  Z-score: 1276.4  bits: 242.2 E(32554): 9e-65
Smith-Waterman score: 1001; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150)

               10        20        30        40        50        60
pF1KE6 MAKIILRHLIEIPVRYQEEFEARGLEDCRLDHALYALPGPTIVDLRKTRAAQSPPVDSAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 MAKIILRHLIEIPVRYQEEFEARGLEDCRLDHALYALPGPTIVDLRKTRAAQSPPVDSAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 ETPPREGKSHFQILLDVVQFLPEDIIIQTFEGWLLIKAQHGTRMDEHGFISRSFTRQYKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 ETPPREGKSHFQILLDVVQFLPEDIIIQTFEGWLLIKAQHGTRMDEHGFISRSFTRQYKL
               70        80        90       100       110       120

              130       140       150
pF1KE6 PDGVEIKDLSAVLCHDGILVVEVKDPVGTK
       ::::::::::::::::::::::::::::::
CCDS39 PDGVEIKDLSAVLCHDGILVVEVKDPVGTK
              130       140       150

>>CCDS8352.1 HSPB2 gene_id:3316|Hs108|chr11               (182 aa)
 initn: 257 init1: 236 opt: 240  Z-score: 311.0  bits: 63.9 E(32554): 5.3e-11
Smith-Waterman score: 240; 37.5% identity (66.3% similar) in 104 aa overlap (47-150:50-151)

         20        30        40        50        60        70      
pF1KE6 QEEFEARGLEDCRLDHALYALPGPTIVDLRKTRAAQSPPVDSAAETPPREGKSHFQILLD
                                     . ::: .   . :. .  : ....:: .::
CCDS83 NPSRLGEQRFGEGLLPEEILTPTLYHGYYVRPRAAPAGEGSRAGASELRLSEGKFQAFLD
      20        30        40        50        60        70         

         80        90       100       110       120       130      
pF1KE6 VVQFLPEDIIIQTFEGWLLIKAQHGTRMDEHGFISRSFTRQYKLPDGVEIKDLSAVLCHD
       : .: :... ..: .. : ..:.:  :.:.:::.:: : : : ::  :.   . :.: ::
CCDS83 VSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSREFCRTYVLPADVDPWRVRAALSHD
      80        90       100       110       120       130         

        140       150                               
pF1KE6 GILVVEVKDPVGTK                               
       ::: .:.  : : .                               
CCDS83 GILNLEA--PRGGRHLDTEVNEVYISLLPAPPDPEEEEEAAIVEP
     140         150       160       170       180  




150 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:06:37 2016 done: Tue Nov  8 14:06:37 2016
 Total Scan time:  1.290 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]