FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6524, 130 aa
  1>>>pF1KE6524 130 - 130 aa - 130 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4626+/-0.000554; mu= 7.3552+/- 0.034
 mean_var=108.1794+/-21.385, 0's: 0 Z-trim(117.5): 3  B-trim: 75 in 2/48
 Lambda= 0.123311
 statistics sampled from 18200 (18203) to 18200 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.856), E-opt: 0.2 (0.559), width:  16
 Scan time:  1.730

The best scores are:                                      opt bits E(32554)
CCDS3569.1 C4orf26 gene_id:152816|Hs108|chr4       ( 130)  976 182.4 6.6e-47
CCDS75142.1 C4orf26 gene_id:152816|Hs108|chr4      (  85)  512 99.8 3.3e-22


>>CCDS3569.1 C4orf26 gene_id:152816|Hs108|chr4            (130 aa)
 initn: 976 init1: 976 opt: 976  Z-score: 955.6  bits: 182.4 E(32554): 6.6e-47
Smith-Waterman score: 976; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KE6 MARRHCFSYWLLVCWLVVTVAEGQEEVFTPPGDSQNNADATDCQIFTLTPPPAPRSPVTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MARRHCFSYWLLVCWLVVTVAEGQEEVFTPPGDSQNNADATDCQIFTLTPPPAPRSPVTR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 AQPITKTPRCPFHFFPRRPRIHFRFPNRPFVPSRCNHRFPFQPFYWPHRYLTYRYFPRRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 AQPITKTPRCPFHFFPRRPRIHFRFPNRPFVPSRCNHRFPFQPFYWPHRYLTYRYFPRRR
               70        80        90       100       110       120

              130
pF1KE6 LQRGSSSEES
       ::::::::::
CCDS35 LQRGSSSEES
              130

>>CCDS75142.1 C4orf26 gene_id:152816|Hs108|chr4           (85 aa)
 initn: 538 init1: 494 opt: 512  Z-score: 512.1  bits: 99.8 E(32554): 3.3e-22
Smith-Waterman score: 512; 93.6% identity (94.9% similar) in 78 aa overlap (1-78:1-74)

               10        20        30        40        50        60
pF1KE6 MARRHCFSYWLLVCWLVVTVAEGQEEVFTPPGDSQNNADATDCQIFTLTPPPAPRSPVTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MARRHCFSYWLLVCWLVVTVAEGQEEVFTPPGDSQNNADATDCQIFTLTPPPAPRSPVTR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 AQPITKTPRCPFHFFPRRPRIHFRFPNRPFVPSRCNHRFPFQPFYWPHRYLTYRYFPRRR
       :::::::::    .::::                                          
CCDS75 AQPITKTPR----YFPRRRLQRGSSSEES                               
                   70        80                                    




130 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:05:22 2016 done: Tue Nov  8 14:05:22 2016
 Total Scan time:  1.730 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]