FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6521, 175 aa
  1>>>pF1KE6521 175 - 175 aa - 175 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6186+/-0.000762; mu= 11.3969+/- 0.046
 mean_var=71.8079+/-13.996, 0's: 0 Z-trim(108.3): 16  B-trim: 0 in 0/53
 Lambda= 0.151352
 statistics sampled from 10122 (10126) to 10122 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.311), width:  16
 Scan time:  1.060

The best scores are:                                      opt bits E(32554)
CCDS5037.1 NDUFAF4 gene_id:29078|Hs108|chr6        ( 175) 1132 255.8   1e-68


>>CCDS5037.1 NDUFAF4 gene_id:29078|Hs108|chr6             (175 aa)
 initn: 1132 init1: 1132 opt: 1132  Z-score: 1347.3  bits: 255.8 E(32554): 1e-68
Smith-Waterman score: 1132; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175)

               10        20        30        40        50        60
pF1KE6 MGALVIRGIRNFNLENRAEREISKMKPSVAPRHPSTNSLLREQISLYPEVKGEIARKDEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MGALVIRGIRNFNLENRAEREISKMKPSVAPRHPSTNSLLREQISLYPEVKGEIARKDEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LLSFLKDVYVDSKDPVSSLQVKAAETCQEPKEFRLPKDHHFDMINIKSIPKGKISIVEAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 LLSFLKDVYVDSKDPVSSLQVKAAETCQEPKEFRLPKDHHFDMINIKSIPKGKISIVEAL
               70        80        90       100       110       120

              130       140       150       160       170     
pF1KE6 TLLNNHKLFPETWTAEKIMQEYQLEQKDVNSLLKYFVTFEVEIFPPEDKKAIRSK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 TLLNNHKLFPETWTAEKIMQEYQLEQKDVNSLLKYFVTFEVEIFPPEDKKAIRSK
              130       140       150       160       170     




175 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:03:52 2016 done: Tue Nov  8 14:03:53 2016
 Total Scan time:  1.060 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]