Result of FASTA (ccds) for
pFN21AE6511
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6511, 175 aa
1>>>pF1KE6511 175 - 175 aa - 175 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2932+/-0.000694; mu= 13.1158+/- 0.042
mean_var=67.1347+/-13.598, 0's: 0 Z-trim(110.1): 13 B-trim: 0 in 0/49
Lambda= 0.156531
statistics sampled from 11337 (11350) to 11337 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.349), width: 16
Scan time: 1.550
The best scores are: opt bits E(32554)
CCDS12579.1 B9D2 gene_id:80776|Hs108|chr19 ( 175) 1261 292.9 6.8e-80
CCDS11205.1 B9D1 gene_id:27077|Hs108|chr17 ( 204) 281 71.6 3.2e-13
CCDS82088.1 B9D1 gene_id:27077|Hs108|chr17 ( 161) 264 67.7 3.8e-12
CCDS82086.1 B9D1 gene_id:27077|Hs108|chr17 ( 186) 264 67.8 4.3e-12
CCDS82087.1 B9D1 gene_id:27077|Hs108|chr17 ( 187) 264 67.8 4.3e-12
CCDS82089.1 B9D1 gene_id:27077|Hs108|chr17 ( 153) 247 63.9 5.2e-11
>>CCDS12579.1 B9D2 gene_id:80776|Hs108|chr19 (175 aa)
initn: 1261 init1: 1261 opt: 1261 Z-score: 1547.9 bits: 292.9 E(32554): 6.8e-80
Smith-Waterman score: 1261; 99.4% identity (100.0% similar) in 175 aa overlap (1-175:1-175)
10 20 30 40 50 60
pF1KE6 MAEVHVIGQIMGASGFSESSLFCKWGIHTGAAWKLLSGVREGQTQVDTPQIGDMAYWSHP
::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAEVHVIGQIIGASGFSESSLFCKWGIHTGAAWKLLSGVREGQTQVDTPQIGDMAYWSHP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 IDLHFATKGLQGWPRLHFQVWSQDSFGRCQLAGYGFCHVPSSPGTHQLACPTWRPLGSWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IDLHFATKGLQGWPRLHFQVWSQDSFGRCQLAGYGFCHVPSSPGTHQLACPTWRPLGSWR
70 80 90 100 110 120
130 140 150 160 170
pF1KE6 EQLARAFVGGGPQLLHGDTIYSGADRYRLHTAAGGTVHLEIGLLLRNFDRYGVEC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EQLARAFVGGGPQLLHGDTIYSGADRYRLHTAAGGTVHLEIGLLLRNFDRYGVEC
130 140 150 160 170
>>CCDS11205.1 B9D1 gene_id:27077|Hs108|chr17 (204 aa)
initn: 220 init1: 153 opt: 281 Z-score: 350.8 bits: 71.6 E(32554): 3.2e-13
Smith-Waterman score: 281; 28.3% identity (59.0% similar) in 173 aa overlap (6-174:13-184)
10 20 30 40 50
pF1KE6 MAEVHVIGQIMGASGFSE-SSLFCKWGIHTGAAWKLLSGVREGQTQVDTPQ--
: ::. .:. : : ..:.::. . : : .:..:: .:. . .
CCDS11 MATASPSVFLLMVNGQVESAQ-FPEYDDLYCKYCFVYGQDWAPTAGLEEGISQITSKSQD
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 IGDMAYWSHPIDLHFATKGLQGWPRLHFQVWSQDSFGRCQLAGYGFCHVPSSPGTHQLAC
. . :. :::. : . . :::.. ..:.. : :: . ::: ::: ::: :. .
CCDS11 VRQALVWNFPIDVTFKSTNPYGWPQIVLSVYGPDVFGNDVVRGYGAVHVPFSPGRHKRTI
60 70 80 90 100 110
120 130 140 150 160
pF1KE6 PTWRPLGSWREQ-LARAFVGGGPQLLHGDTIYSGADRYRLHTAAGGTVHLEIGLLLRNFD
: . : .. . : .. :.: :. .. .: : .. . : : : .... ...
CCDS11 PMFVPESTSKLQKFTSWFMGRRPEYTDPKVVAQGEGREVTRVRSQGFVTLLFNVVTKDMR
120 130 140 150 160 170
170
pF1KE6 RYGVEC
. : .
CCDS11 KLGYDTGPSDTQGVLGPSPPQSFPQ
180 190 200
>>CCDS82088.1 B9D1 gene_id:27077|Hs108|chr17 (161 aa)
initn: 220 init1: 153 opt: 264 Z-score: 331.6 bits: 67.7 E(32554): 3.8e-12
Smith-Waterman score: 264; 31.0% identity (59.3% similar) in 145 aa overlap (6-146:13-156)
10 20 30 40 50
pF1KE6 MAEVHVIGQIMGASGFSE-SSLFCKWGIHTGAAWKLLSGVREGQTQVDTPQ--
: ::. .:. : : ..:.::. . : : .:..:: .:. . .
CCDS82 MATASPSVFLLMVNGQVESAQ-FPEYDDLYCKYCFVYGQDWAPTAGLEEGISQITSKSQD
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 IGDMAYWSHPIDLHFATKGLQGWPRLHFQVWSQDSFGRCQLAGYGFCHVPSSPGTHQLAC
. . :. :::. : . . :::.. ..:.. : :: . ::: ::: ::: :. .
CCDS82 VRQALVWNFPIDVTFKSTNPYGWPQIVLSVYGPDVFGNDVVRGYGAVHVPFSPGRHKRTI
60 70 80 90 100 110
120 130 140 150 160
pF1KE6 PTWRPLGSWREQ-LARAFVGGGPQLLHGDTIYSGADRYRLHTAAGGTVHLEIGLLLRNFD
: . : .. . : .. :.: :. .. .: :
CCDS82 PMFVPESTSKLQKFTSWFMGRRPEYTDPKVVAQGEGREAQPG
120 130 140 150 160
170
pF1KE6 RYGVEC
>>CCDS82086.1 B9D1 gene_id:27077|Hs108|chr17 (186 aa)
initn: 249 init1: 182 opt: 264 Z-score: 330.7 bits: 67.8 E(32554): 4.3e-12
Smith-Waterman score: 264; 31.0% identity (59.3% similar) in 145 aa overlap (6-146:13-156)
10 20 30 40 50
pF1KE6 MAEVHVIGQIMGASGFSE-SSLFCKWGIHTGAAWKLLSGVREGQTQVDTPQ--
: ::. .:. : : ..:.::. . : : .:..:: .:. . .
CCDS82 MATASPSVFLLMVNGQVESAQ-FPEYDDLYCKYCFVYGQDWAPTAGLEEGISQITSKSQD
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 IGDMAYWSHPIDLHFATKGLQGWPRLHFQVWSQDSFGRCQLAGYGFCHVPSSPGTHQLAC
. . :. :::. : . . :::.. ..:.. : :: . ::: ::: ::: :. .
CCDS82 VRQALVWNFPIDVTFKSTNPYGWPQIVLSVYGPDVFGNDVVRGYGAVHVPFSPGRHKRTI
60 70 80 90 100 110
120 130 140 150 160
pF1KE6 PTWRPLGSWREQ-LARAFVGGGPQLLHGDTIYSGADRYRLHTAAGGTVHLEIGLLLRNFD
: . : .. . : .. :.: :. .. .: :
CCDS82 PMFVPESTSKLQKFTSWFMGRRPEYTDPKVVAQGEGREAITAPRKAVFSVHGLTSPRALA
120 130 140 150 160 170
170
pF1KE6 RYGVEC
CCDS82 LVHIKGT
180
>>CCDS82087.1 B9D1 gene_id:27077|Hs108|chr17 (187 aa)
initn: 220 init1: 153 opt: 264 Z-score: 330.6 bits: 67.8 E(32554): 4.3e-12
Smith-Waterman score: 264; 31.0% identity (59.3% similar) in 145 aa overlap (6-146:13-156)
10 20 30 40 50
pF1KE6 MAEVHVIGQIMGASGFSE-SSLFCKWGIHTGAAWKLLSGVREGQTQVDTPQ--
: ::. .:. : : ..:.::. . : : .:..:: .:. . .
CCDS82 MATASPSVFLLMVNGQVESAQ-FPEYDDLYCKYCFVYGQDWAPTAGLEEGISQITSKSQD
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 IGDMAYWSHPIDLHFATKGLQGWPRLHFQVWSQDSFGRCQLAGYGFCHVPSSPGTHQLAC
. . :. :::. : . . :::.. ..:.. : :: . ::: ::: ::: :. .
CCDS82 VRQALVWNFPIDVTFKSTNPYGWPQIVLSVYGPDVFGNDVVRGYGAVHVPFSPGRHKRTI
60 70 80 90 100 110
120 130 140 150 160
pF1KE6 PTWRPLGSWREQ-LARAFVGGGPQLLHGDTIYSGADRYRLHTAAGGTVHLEIGLLLRNFD
: . : .. . : .. :.: :. .. .: :
CCDS82 PMFVPESTSKLQKFTSWFMGRRPEYTDPKVVAQGEGREDENAEAEIPRSTWVSLCPSPAW
120 130 140 150 160 170
170
pF1KE6 RYGVEC
CCDS82 LMLPFCPQ
180
>>CCDS82089.1 B9D1 gene_id:27077|Hs108|chr17 (153 aa)
initn: 220 init1: 153 opt: 247 Z-score: 311.2 bits: 63.9 E(32554): 5.2e-11
Smith-Waterman score: 247; 33.3% identity (61.7% similar) in 120 aa overlap (6-122:13-131)
10 20 30 40 50
pF1KE6 MAEVHVIGQIMGASGFSE-SSLFCKWGIHTGAAWKLLSGVREGQTQVDTPQ--
: ::. .:. : : ..:.::. . : : .:..:: .:. . .
CCDS82 MATASPSVFLLMVNGQVESAQ-FPEYDDLYCKYCFVYGQDWAPTAGLEEGISQITSKSQD
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 IGDMAYWSHPIDLHFATKGLQGWPRLHFQVWSQDSFGRCQLAGYGFCHVPSSPGTHQLAC
. . :. :::. : . . :::.. ..:.. : :: . ::: ::: ::: :. .
CCDS82 VRQALVWNFPIDVTFKSTNPYGWPQIVLSVYGPDVFGNDVVRGYGAVHVPFSPGRHKRTI
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE6 PTWRPLGSWREQLARAFVGGGPQLLHGDTIYSGADRYRLHTAAGGTVHLEIGLLLRNFDR
: . : .. . :
CCDS82 PMFVPESTSKLQKFTSLCLVASSDLQAAPPTEDK
120 130 140 150
175 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 13:58:13 2016 done: Tue Nov 8 13:58:13 2016
Total Scan time: 1.550 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]