FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6509, 176 aa
  1>>>pF1KE6509 176 - 176 aa - 176 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3756+/-0.000747; mu= 11.6391+/- 0.045
 mean_var=57.2433+/-11.481, 0's: 0 Z-trim(107.7): 5  B-trim: 0 in 0/49
 Lambda= 0.169517
 statistics sampled from 9714 (9716) to 9714 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.298), width:  16
 Scan time:  1.390

The best scores are:                                      opt bits E(32554)
CCDS13081.1 PRND gene_id:23627|Hs108|chr20         ( 176) 1229 308.4 1.4e-84


>>CCDS13081.1 PRND gene_id:23627|Hs108|chr20              (176 aa)
 initn: 1229 init1: 1229 opt: 1229  Z-score: 1631.7  bits: 308.4 E(32554): 1.4e-84
Smith-Waterman score: 1229; 99.4% identity (99.4% similar) in 176 aa overlap (1-176:1-176)

               10        20        30        40        50        60
pF1KE6 MRKHLSWWWLATVCMLLFSHLSAVQTRGIKHRIKWNRKALPSTAQITEAQVAENRPGAFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MRKHLSWWWLATVCMLLFSHLSAVQTRGIKHRIKWNRKALPSTAQITEAQVAENRPGAFI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 KQGRKLDIDFGAEGNRYYEANYWQFPDGIHYNGCSEANVTKEAFVTGCINATQAANQGEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KQGRKLDIDFGAEGNRYYEANYWQFPDGIHYNGCSEANVTKEAFVTGCINATQAANQGEF
               70        80        90       100       110       120

              130       140       150       160       170      
pF1KE6 QKPDNKLHQQVLWRLVQELCSLKHCEFWLERGAGLRVTMHQPVLLCLLALIWLMVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
CCDS13 QKPDNKLHQQVLWRLVQELCSLKHCEFWLERGAGLRVTMHQPVLLCLLALIWLTVK
              130       140       150       160       170      




176 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:57:04 2016 done: Tue Nov  8 13:57:04 2016
 Total Scan time:  1.390 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]