FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6508, 175 aa
  1>>>pF1KE6508 175 - 175 aa - 175 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3565+/-0.000363; mu= 11.5865+/- 0.022
 mean_var=56.0587+/-10.969, 0's: 0 Z-trim(111.8): 17  B-trim: 15 in 1/51
 Lambda= 0.171298
 statistics sampled from 20517 (20528) to 20517 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.241), width:  16
 Scan time:  4.990

The best scores are:                                      opt bits E(85289)
NP_002486 (OMIM: 252010,256000,602694) NADH dehydr ( 175) 1140 289.8 1.5e-78
NP_001304980 (OMIM: 252010,256000,602694) NADH deh ( 120)  758 195.4 2.8e-50
XP_016864980 (OMIM: 252010,256000,602694) PREDICTE ( 118)  358 96.5 1.6e-20


>>NP_002486 (OMIM: 252010,256000,602694) NADH dehydrogen  (175 aa)
 initn: 1140 init1: 1140 opt: 1140  Z-score: 1531.3  bits: 289.8 E(85289): 1.5e-78
Smith-Waterman score: 1140; 99.4% identity (100.0% similar) in 175 aa overlap (1-175:1-175)

               10        20        30        40        50        60
pF1KE6 MAAVSMSVVLRQTLWRRRAVAVAALSVSRVPTRSLRTSSWRLAQDQTQDTQLITVDEKLD
       ::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
NP_002 MAAVSMSVVLRQTLWRRRAVAVAALSVSRVPTRSLRTSTWRLAQDQTQDTQLITVDEKLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 ITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADP
               70        80        90       100       110       120

              130       140       150       160       170     
pF1KE6 LSNMVLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSWNKRTRVSTK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LSNMVLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSWNKRTRVSTK
              130       140       150       160       170     

>>NP_001304980 (OMIM: 252010,256000,602694) NADH dehydro  (120 aa)
 initn: 778 init1: 758 opt: 758  Z-score: 1023.8  bits: 195.4 E(85289): 2.8e-50
Smith-Waterman score: 758; 97.5% identity (99.2% similar) in 119 aa overlap (1-119:1-119)

               10        20        30        40        50        60
pF1KE6 MAAVSMSVVLRQTLWRRRAVAVAALSVSRVPTRSLRTSSWRLAQDQTQDTQLITVDEKLD
       ::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
NP_001 MAAVSMSVVLRQTLWRRRAVAVAALSVSRVPTRSLRTSTWRLAQDQTQDTQLITVDEKLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 ITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: . 
NP_001 ITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTMEL
               70        80        90       100       110       120

              130       140       150       160       170     
pF1KE6 LSNMVLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSWNKRTRVSTK

>>XP_016864980 (OMIM: 252010,256000,602694) PREDICTED: N  (118 aa)
 initn: 371 init1: 358 opt: 358  Z-score: 489.6  bits: 96.5 E(85289): 1.6e-20
Smith-Waterman score: 358; 98.3% identity (100.0% similar) in 59 aa overlap (1-59:1-59)

               10        20        30        40        50        60
pF1KE6 MAAVSMSVVLRQTLWRRRAVAVAALSVSRVPTRSLRTSSWRLAQDQTQDTQLITVDEKLD
       ::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: 
XP_016 MAAVSMSVVLRQTLWRRRAVAVAALSVSRVPTRSLRTSTWRLAQDQTQDTQLITVDEKLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 ITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADP
                                                                   
XP_016 YLVPLCFTFCGLATPSLELATLFPASRHLEFLFTLPGCILTNPEDFIRSPSTYSSNAT  
               70        80        90       100       110          




175 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:56:35 2016 done: Tue Nov  8 13:56:36 2016
 Total Scan time:  4.990 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]