FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6508, 175 aa
  1>>>pF1KE6508 175 - 175 aa - 175 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3682+/-0.000829; mu= 11.5024+/- 0.049
 mean_var=55.1086+/-10.998, 0's: 0 Z-trim(105.1): 17  B-trim: 4 in 1/50
 Lambda= 0.172769
 statistics sampled from 8226 (8230) to 8226 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.253), width:  16
 Scan time:  1.300

The best scores are:                                      opt bits E(32554)
CCDS3960.1 NDUFS4 gene_id:4724|Hs108|chr5          ( 175) 1140 292.1 1.2e-79


>>CCDS3960.1 NDUFS4 gene_id:4724|Hs108|chr5               (175 aa)
 initn: 1140 init1: 1140 opt: 1140  Z-score: 1543.5  bits: 292.1 E(32554): 1.2e-79
Smith-Waterman score: 1140; 99.4% identity (100.0% similar) in 175 aa overlap (1-175:1-175)

               10        20        30        40        50        60
pF1KE6 MAAVSMSVVLRQTLWRRRAVAVAALSVSRVPTRSLRTSSWRLAQDQTQDTQLITVDEKLD
       ::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
CCDS39 MAAVSMSVVLRQTLWRRRAVAVAALSVSRVPTRSLRTSTWRLAQDQTQDTQLITVDEKLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 ITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 ITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADP
               70        80        90       100       110       120

              130       140       150       160       170     
pF1KE6 LSNMVLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSWNKRTRVSTK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 LSNMVLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSWNKRTRVSTK
              130       140       150       160       170     




175 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:56:35 2016 done: Tue Nov  8 13:56:35 2016
 Total Scan time:  1.300 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]