Result of FASTA (ccds) for
pFN21AE6479
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6479, 475 aa
1>>>pF1KE6479 475 - 475 aa - 475 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3952+/-0.000967; mu= 17.1688+/- 0.058
mean_var=65.0096+/-12.918, 0's: 0 Z-trim(104.3): 16 B-trim: 0 in 0/50
Lambda= 0.159069
statistics sampled from 7847 (7856) to 7847 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.616), E-opt: 0.2 (0.241), width: 16
Scan time: 2.510
The best scores are: opt bits E(32554)
CCDS12006.1 CNDP2 gene_id:55748|Hs108|chr18 ( 475) 3187 740.5 9.1e-214
CCDS54190.1 CNDP2 gene_id:55748|Hs108|chr18 ( 391) 2166 506.1 2.6e-143
CCDS12007.1 CNDP1 gene_id:84735|Hs108|chr18 ( 507) 1772 415.8 5.5e-116
>>CCDS12006.1 CNDP2 gene_id:55748|Hs108|chr18 (475 aa)
initn: 3187 init1: 3187 opt: 3187 Z-score: 3951.2 bits: 740.5 E(32554): 9.1e-214
Smith-Waterman score: 3187; 100.0% identity (100.0% similar) in 475 aa overlap (1-475:1-475)
10 20 30 40 50 60
pF1KE6 MAALTTLFKYIDENQDRYIKKLAKWVAIQSVSAWPEKRGEIRRMMEVAAADVKQLGGSVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAALTTLFKYIDENQDRYIKKLAKWVAIQSVSAWPEKRGEIRRMMEVAAADVKQLGGSVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LVDIGKQKLPDGSEIPLPPILLGRLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LVDIGKQKLPDGSEIPLPPILLGRLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 RDGKLYGRGSTDDKGPVAGWINALEAYQKTGQEIPVNVRFCLEGMEESGSEGLDELIFAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RDGKLYGRGSTDDKGPVAGWINALEAYQKTGQEIPVNVRFCLEGMEESGSEGLDELIFAR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 KDTFFKDVDYVCISDNYWLGKKKPCITYGLRGICYFFIEVECSNKDLHSGVYGGSVHEAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KDTFFKDVDYVCISDNYWLGKKKPCITYGLRGICYFFIEVECSNKDLHSGVYGGSVHEAM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 TDLILLMGSLVDKRGNILIPGINEAVAAVTEEEHKLYDDIDFDIEEFAKDVGAQILLHSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TDLILLMGSLVDKRGNILIPGINEAVAAVTEEEHKLYDDIDFDIEEFAKDVGAQILLHSH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVVGKFSIRLVPNMTPEVVGEQVTSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVVGKFSIRLVPNMTPEVVGEQVTSY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 LTKKFAELRSPNEFKVYMGHGGKPWVSDFSHPHYLAGRRAMKTVFGVEPDLTREGGSIPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LTKKFAELRSPNEFKVYMGHGGKPWVSDFSHPHYLAGRRAMKTVFGVEPDLTREGGSIPV
370 380 390 400 410 420
430 440 450 460 470
pF1KE6 TLTFQEATGKNVMLLPVGSADDGAHSQNEKLNRYNYIEGTKMLAAYLYEVSQLKD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TLTFQEATGKNVMLLPVGSADDGAHSQNEKLNRYNYIEGTKMLAAYLYEVSQLKD
430 440 450 460 470
>>CCDS54190.1 CNDP2 gene_id:55748|Hs108|chr18 (391 aa)
initn: 2166 init1: 2166 opt: 2166 Z-score: 2686.2 bits: 506.1 E(32554): 2.6e-143
Smith-Waterman score: 2421; 82.3% identity (82.3% similar) in 475 aa overlap (1-475:1-391)
10 20 30 40 50 60
pF1KE6 MAALTTLFKYIDENQDRYIKKLAKWVAIQSVSAWPEKRGEIRRMMEVAAADVKQLGGSVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MAALTTLFKYIDENQDRYIKKLAKWVAIQSVSAWPEKRGEIRRMMEVAAADVKQLGGSVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LVDIGKQKLPDGSEIPLPPILLGRLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVE
::::::::
CCDS54 LVDIGKQK----------------------------------------------------
130 140 150 160 170 180
pF1KE6 RDGKLYGRGSTDDKGPVAGWINALEAYQKTGQEIPVNVRFCLEGMEESGSEGLDELIFAR
::::::::::::::::::::::::::::
CCDS54 --------------------------------EIPVNVRFCLEGMEESGSEGLDELIFAR
70 80 90
190 200 210 220 230 240
pF1KE6 KDTFFKDVDYVCISDNYWLGKKKPCITYGLRGICYFFIEVECSNKDLHSGVYGGSVHEAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KDTFFKDVDYVCISDNYWLGKKKPCITYGLRGICYFFIEVECSNKDLHSGVYGGSVHEAM
100 110 120 130 140 150
250 260 270 280 290 300
pF1KE6 TDLILLMGSLVDKRGNILIPGINEAVAAVTEEEHKLYDDIDFDIEEFAKDVGAQILLHSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TDLILLMGSLVDKRGNILIPGINEAVAAVTEEEHKLYDDIDFDIEEFAKDVGAQILLHSH
160 170 180 190 200 210
310 320 330 340 350 360
pF1KE6 KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVVGKFSIRLVPNMTPEVVGEQVTSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVVGKFSIRLVPNMTPEVVGEQVTSY
220 230 240 250 260 270
370 380 390 400 410 420
pF1KE6 LTKKFAELRSPNEFKVYMGHGGKPWVSDFSHPHYLAGRRAMKTVFGVEPDLTREGGSIPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LTKKFAELRSPNEFKVYMGHGGKPWVSDFSHPHYLAGRRAMKTVFGVEPDLTREGGSIPV
280 290 300 310 320 330
430 440 450 460 470
pF1KE6 TLTFQEATGKNVMLLPVGSADDGAHSQNEKLNRYNYIEGTKMLAAYLYEVSQLKD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TLTFQEATGKNVMLLPVGSADDGAHSQNEKLNRYNYIEGTKMLAAYLYEVSQLKD
340 350 360 370 380 390
>>CCDS12007.1 CNDP1 gene_id:84735|Hs108|chr18 (507 aa)
initn: 1689 init1: 1689 opt: 1772 Z-score: 2195.8 bits: 415.8 E(32554): 5.5e-116
Smith-Waterman score: 1772; 53.2% identity (80.6% similar) in 474 aa overlap (2-473:33-506)
10 20 30
pF1KE6 MAALTTLFKYIDENQDRYIKKLAKWVAIQS-
: : .:.::: .::.... : .::::.:
CCDS12 PKLGRMAASLLAVLLLLLERGMFSSPSPPPALLEKVFQYIDLHQDEFVQTLKEWVAIESD
10 20 30 40 50 60
40 50 60 70 80
pF1KE6 -VSAWPEKRGEIRRMMEVAAADVKQLGGSVELVDIGKQKLPDGSEIPLPPILLGRLGSDP
:. :. : :. ::: ::: ...::. : ::.: :.::::. .:.::..:..:::::
CCDS12 SVQPVPRFRQELFRMMAVAADTLQRLGARVASVDMGPQQLPDGQSLPIPPVILAELGSDP
70 80 90 100 110 120
90 100 110 120 130 140
pF1KE6 QKKTVCIYGHLDVQPAALEDGWDSEPFTLVERDGKLYGRGSTDDKGPVAGWINALEAYQK
: :::.::::::::: ::: ..:..:.: ::::::::.::.:::: .::::. :..
CCDS12 TKGTVCFYGHLDVQPADRGDGWLTDPYVLTEVDGKLYGRGATDNKGPVLAWINAVSAFRA
130 140 150 160 170 180
150 160 170 180 190 200
pF1KE6 TGQEIPVNVRFCLEGMEESGSEGLDELIFARKDTFFKDVDYVCISDNYWLGKKKPCITYG
:..:::..: .:::::.:: .:.::. .:: ::. :::. :::: :....:: ::::
CCDS12 LEQDLPVNIKFIIEGMEEAGSVALEELVEKEKDRFFSGVDYIVISDNLWISQRKPAITYG
190 200 210 220 230 240
210 220 230 240 250 260
pF1KE6 LRGICYFFIEVECSNKDLHSGVYGGSVHEAMTDLILLMGSLVDKRGNILIPGINEAVAAV
:: ::..::.: ..:.:::..:: .:: :.::. :.:::::. :.::.::: . :. .
CCDS12 TRGNSYFMVEVKCRDQDFHSGTFGGILHEPMADLVALLGSLVDSSGHILVPGIYDEVVPL
250 260 270 280 290 300
270 280 290 300 310 320
pF1KE6 TEEEHKLYDDIDFDIEEFAKDVGAQILLHSHKKDILMHRWRYPSLSLHGIEGAFSGSGAK
:::: . : : .:.::. .. .. .: . :..:::: :::::::.:::::::. :.:
CCDS12 TEEEINTYKAIHLDLEEYRNSSRVEKFLFDTKEEILMHLWRYPSLSIHGIEGAFDEPGTK
310 320 330 340 350 360
330 340 350 360 370 380
pF1KE6 TVIPRKVVGKFSIRLVPNMTPEVVGEQVTSYLTKKFAELRSPNEFKVYMGHGGKPWVSDF
:::: .:.:::::::::.:. .: .::: .: :.. : :.. : : : .::....
CCDS12 TVIPGRVIGKFSIRLVPHMNVSAVEKQVTRHLEDVFSKRNSSNKMVVSMTLGLHPWIANI
370 380 390 400 410 420
390 400 410 420 430 440
pF1KE6 SHPHYLAGRRAMKTVFGVEPDLTREGGSIPVTLTFQEATGKNVMLLPVGSADDGAHSQNE
. .:::..::..::::.:::. :.:..::.. ::: . :.:.:.:.:..::: :::::
CCDS12 DDTQYLAAKRAIRTVFGTEPDMIRDGSTIPIAKMFQEIVHKSVVLIPLGAVDDGEHSQNE
430 440 450 460 470 480
450 460 470
pF1KE6 KLNRYNYIEGTKMLAAYLYEVSQLKD
:.::.:::::::..::.. :..::
CCDS12 KINRWNYIEGTKLFAAFFLEMAQLH
490 500
475 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 13:42:00 2016 done: Tue Nov 8 13:42:01 2016
Total Scan time: 2.510 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]