FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6473, 453 aa
  1>>>pF1KE6473 453 - 453 aa - 453 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2624+/-0.000815; mu= 13.4873+/- 0.049
 mean_var=95.5993+/-18.817, 0's: 0 Z-trim(109.6): 17  B-trim: 28 in 1/50
 Lambda= 0.131174
 statistics sampled from 11005 (11015) to 11005 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.338), width:  16
 Scan time:  2.330

The best scores are:                                      opt bits E(32554)
CCDS6040.1 CHMP7 gene_id:91782|Hs108|chr8          ( 453) 2941 566.8 1.6e-161


>>CCDS6040.1 CHMP7 gene_id:91782|Hs108|chr8               (453 aa)
 initn: 2941 init1: 2941 opt: 2941  Z-score: 3013.4  bits: 566.8 E(32554): 1.6e-161
Smith-Waterman score: 2941; 100.0% identity (100.0% similar) in 453 aa overlap (1-453:1-453)

               10        20        30        40        50        60
pF1KE6 MWSPEREAEAPAGGDPAGLLPPEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MWSPEREAEAPAGGDPAGLLPPEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LSHSRRQGVVRLRLRDLQEAFQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LSHSRRQGVVRLRLRDLQEAFQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWIS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 WGVGVFLLKPLKWTLSNMLGDNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 WGVGVFLLKPLKWTLSNMLGDNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 SELSTLCANSCPDERTFYLVLLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SELSTLCANSCPDERTFYLVLLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 VYQLMQSEQLLSRKVESLSQEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 VYQLMQSEQLLSRKVESLSQEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 KLDTVQGILDRIYASQTDQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 KLDTVQGILDRIYASQTDQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 VSQTLAGGVTNGLDFDSEELEKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 VSQTLAGGVTNGLDFDSEELEKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAE
              370       380       390       400       410       420

              430       440       450   
pF1KE6 LEAELEKLSLSEGGLVPSSKSPKRQLEPTLKPL
       :::::::::::::::::::::::::::::::::
CCDS60 LEAELEKLSLSEGGLVPSSKSPKRQLEPTLKPL
              430       440       450   




453 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:38:29 2016 done: Tue Nov  8 13:38:29 2016
 Total Scan time:  2.330 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]