FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6442, 455 aa
  1>>>pF1KE6442 455 - 455 aa - 455 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8382+/-0.000729; mu= 21.0580+/- 0.044
 mean_var=73.7373+/-15.216, 0's: 0 Z-trim(110.0): 48  B-trim: 48 in 1/48
 Lambda= 0.149359
 statistics sampled from 11260 (11307) to 11260 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.347), width:  16
 Scan time:  2.250

The best scores are:                                      opt bits E(32554)
CCDS3365.1 MFSD10 gene_id:10227|Hs108|chr4         ( 455) 3009 657.5 8.1e-189


>>CCDS3365.1 MFSD10 gene_id:10227|Hs108|chr4              (455 aa)
 initn: 3009 init1: 3009 opt: 3009  Z-score: 3503.4  bits: 657.5 E(32554): 8.1e-189
Smith-Waterman score: 3009; 100.0% identity (100.0% similar) in 455 aa overlap (1-455:1-455)

               10        20        30        40        50        60
pF1KE6 MGWGGGGGCTPRPPIHQQPPERRVVTVVFLGLLLDLLAFTLLLPLLPGLLESHGRAHDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MGWGGGGGCTPRPPIHQQPPERRVVTVVFLGLLLDLLAFTLLLPLLPGLLESHGRAHDPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 YGSWQGGVDWFATAIGMPVEKRYNSVLFGGLIGSAFSVLQFLCAPLTGATSDCLGRRPVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YGSWQGGVDWFATAIGMPVEKRYNSVLFGGLIGSAFSVLQFLCAPLTGATSDCLGRRPVM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LLCLMGVATSYAVWATSRSFAAFLASRLIGGISKGNVSLSTAIVADLGSPLARSQGMAVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LLCLMGVATSYAVWATSRSFAAFLASRLIGGISKGNVSLSTAIVADLGSPLARSQGMAVI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 GVAFSLGFTLGPMLGASLPLEMAPWFALLFAASDLLFIFCFLPETLPLEKRAPSIALGFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GVAFSLGFTLGPMLGASLPLEMAPWFALLFAASDLLFIFCFLPETLPLEKRAPSIALGFR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 DAADLLSPLALLRFSAVARGQDPPSGDRLSSLRRLGLVYFLYLFLFSGLEYTLSFLTHQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DAADLLSPLALLRFSAVARGQDPPSGDRLSSLRRLGLVYFLYLFLFSGLEYTLSFLTHQR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 FQFSSLQQGKMFFLIGLTMATIQGAYARRIHPGGEVAAVKRALLLLVPAFLLIGWGRSLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FQFSSLQQGKMFFLIGLTMATIQGAYARRIHPGGEVAAVKRALLLLVPAFLLIGWGRSLP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 VLGLGLLLYSFAAAVVVPCLSSVVAGYGSPGQKGTVMGTLRSLGALARAAGPLVAASVYW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VLGLGLLLYSFAAAVVVPCLSSVVAGYGSPGQKGTVMGTLRSLGALARAAGPLVAASVYW
              370       380       390       400       410       420

              430       440       450     
pF1KE6 LAGAQACFTTWSGLFLLPFFLLQKLSYPAQTLKAE
       :::::::::::::::::::::::::::::::::::
CCDS33 LAGAQACFTTWSGLFLLPFFLLQKLSYPAQTLKAE
              430       440       450     




455 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:20:43 2016 done: Tue Nov  8 13:20:43 2016
 Total Scan time:  2.250 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]