Result of FASTA (ccds) for
pFN21AE6441
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6441, 464 aa
1>>>pF1KE6441 464 - 464 aa - 464 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3356+/-0.000759; mu= 17.2851+/- 0.045
mean_var=64.0525+/-12.788, 0's: 0 Z-trim(107.8): 9 B-trim: 11 in 2/49
Lambda= 0.160253
statistics sampled from 9804 (9810) to 9804 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.301), width: 16
Scan time: 3.170
The best scores are: opt bits E(32554)
CCDS10528.1 ALG1 gene_id:56052|Hs108|chr16 ( 464) 3197 747.8 5.3e-216
CCDS81946.1 ALG1 gene_id:56052|Hs108|chr16 ( 353) 2460 577.4 8.2e-165
CCDS33840.1 ALG1L gene_id:200810|Hs108|chr3 ( 187) 707 172.0 4.8e-43
CCDS74998.1 ALG1L gene_id:200810|Hs108|chr3 ( 207) 707 172.0 5.2e-43
>>CCDS10528.1 ALG1 gene_id:56052|Hs108|chr16 (464 aa)
initn: 3197 init1: 3197 opt: 3197 Z-score: 3991.4 bits: 747.8 E(32554): 5.3e-216
Smith-Waterman score: 3197; 99.8% identity (100.0% similar) in 464 aa overlap (1-464:1-464)
10 20 30 40 50 60
pF1KE6 MAASCLVLLALCLLLPLLLLGGWKRWRRGRAARHVVAVVLGDVGRSPRMQYHALSLAMHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAASCLVLLALCLLLPLLLLGGWKRWRRGRAARHVVAVVLGDVGRSPRMQYHALSLAMHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 FSVTLLGFCNSKPHDELLQNNRIQIVGLTELQSLAVGPRVFQYGVKVVLQAMYLLWKLMW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FSVTLLGFCNSKPHDELLQNNRIQIVGLTELQSLAVGPRVFQYGVKVVLQAMYLLWKLMW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 REPGAYIFLQNPPGLPSIAVCWFVGCLCGSKLVIDWHNYGYSIMGLVHGPNHPLVLLAKW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 REPGAYIFLQNPPGLPSIAVCWFVGCLCGSKLVIDWHNYGYSIMGLVHGPNHPLVLLAKW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 YEKFFGRLSHLNLCVTNAMREDLADNWHIRAVTVYDKPASFFKETPLDLQHRLFMKLGSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YEKFFGRLSHLNLCVTNAMREDLADNWHIRAVTVYDKPASFFKETPLDLQHRLFMKLGSM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 HSPFRARSEPEDPVTERSAFTERDAGNGLVTRLRERPALLVSSTSWTEDEDFSILLAALE
::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::
CCDS10 HSPFRARSEPEDPVTERSAFTERDAGSGLVTRLRERPALLVSSTSWTEDEDFSILLAALE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 KFEQLTLDGHNLPSLVCVITGKGPLREYYSRLIHQKHFQHIQVCTPWLEAEDYPLLLGSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KFEQLTLDGHNLPSLVCVITGKGPLREYYSRLIHQKHFQHIQVCTPWLEAEDYPLLLGSA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 DLGVCLHTSSSGLDLPMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAAQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DLGVCLHTSSSGLDLPMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAAQL
370 380 390 400 410 420
430 440 450 460
pF1KE6 QMLFSNFPDPAGKLNQFRKNLRESQQLRWDESWVQTVLPLVMDT
::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QMLFSNFPDPAGKLNQFRKNLRESQQLRWDESWVQTVLPLVMDT
430 440 450 460
>>CCDS81946.1 ALG1 gene_id:56052|Hs108|chr16 (353 aa)
initn: 2460 init1: 2460 opt: 2460 Z-score: 3072.4 bits: 577.4 E(32554): 8.2e-165
Smith-Waterman score: 2460; 99.7% identity (100.0% similar) in 353 aa overlap (112-464:1-353)
90 100 110 120 130 140
pF1KE6 RIQIVGLTELQSLAVGPRVFQYGVKVVLQAMYLLWKLMWREPGAYIFLQNPPGLPSIAVC
::::::::::::::::::::::::::::::
CCDS81 MYLLWKLMWREPGAYIFLQNPPGLPSIAVC
10 20 30
150 160 170 180 190 200
pF1KE6 WFVGCLCGSKLVIDWHNYGYSIMGLVHGPNHPLVLLAKWYEKFFGRLSHLNLCVTNAMRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 WFVGCLCGSKLVIDWHNYGYSIMGLVHGPNHPLVLLAKWYEKFFGRLSHLNLCVTNAMRE
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE6 DLADNWHIRAVTVYDKPASFFKETPLDLQHRLFMKLGSMHSPFRARSEPEDPVTERSAFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DLADNWHIRAVTVYDKPASFFKETPLDLQHRLFMKLGSMHSPFRARSEPEDPVTERSAFT
100 110 120 130 140 150
270 280 290 300 310 320
pF1KE6 ERDAGNGLVTRLRERPALLVSSTSWTEDEDFSILLAALEKFEQLTLDGHNLPSLVCVITG
:::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ERDAGSGLVTRLRERPALLVSSTSWTEDEDFSILLAALEKFEQLTLDGHNLPSLVCVITG
160 170 180 190 200 210
330 340 350 360 370 380
pF1KE6 KGPLREYYSRLIHQKHFQHIQVCTPWLEAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KGPLREYYSRLIHQKHFQHIQVCTPWLEAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVD
220 230 240 250 260 270
390 400 410 420 430 440
pF1KE6 MFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAAQLQMLFSNFPDPAGKLNQFRKNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAAQLQMLFSNFPDPAGKLNQFRKNL
280 290 300 310 320 330
450 460
pF1KE6 RESQQLRWDESWVQTVLPLVMDT
:::::::::::::::::::::::
CCDS81 RESQQLRWDESWVQTVLPLVMDT
340 350
>>CCDS33840.1 ALG1L gene_id:200810|Hs108|chr3 (187 aa)
initn: 547 init1: 414 opt: 707 Z-score: 886.3 bits: 172.0 E(32554): 4.8e-43
Smith-Waterman score: 850; 70.2% identity (72.1% similar) in 208 aa overlap (256-463:2-158)
230 240 250 260 270 280
pF1KE6 PLDLQHRLFMKLGSMHSPFRARSEPEDPVTERSAFTERDAGNGLVTRLRERPALLVSSTS
::::: : :::. :: .::: ::::::::.
CCDS33 MERSAFMELDAGSRLVMHLREWPALLVSSTG
10 20 30
290 300 310 320 330 340
pF1KE6 WTEDEDFSILLAALEKFEQLTLDGHNLPSLVCVITGKGPLREYYSRLIHQKHFQHIQVCT
::: ::::::::::::::::::::
CCDS33 WTE-------------FEQLTLDGHNLPSLVCVITG------------------------
40 50
350 360 370 380 390 400
pF1KE6 PWLEAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCCLPVCAVNFKCLHELVKHEE
:.::::::: :::::::::::::::::::::::::::::::::::::
CCDS33 -------------SVDLGVCLHMSSSGLDLPMKVVDMFGCCLPVCAVNFKCLHELVKHEE
60 70 80 90 100
410 420 430 440 450 460
pF1KE6 NGLVFEDSEELAAQLQMLFSNFPDPAGKLNQFRKNLRESQQLRWDESWVQTVLPLVMDT
::::::::::::: :::::::::::::::::: :::::::::::::::::::::::::
CCDS33 NGLVFEDSEELAA-LQMLFSNFPDPAGKLNQFWKNLRESQQLRWDESWVQTVLPLVMDIQ
110 120 130 140 150 160
CCDS33 LLGQRLKPRDPCCPSRSFFSESQGKPF
170 180
>>CCDS74998.1 ALG1L gene_id:200810|Hs108|chr3 (207 aa)
initn: 632 init1: 414 opt: 707 Z-score: 885.6 bits: 172.0 E(32554): 5.2e-43
Smith-Waterman score: 935; 69.9% identity (72.5% similar) in 229 aa overlap (235-463:1-178)
210 220 230 240 250 260
pF1KE6 DNWHIRAVTVYDKPASFFKETPLDLQHRLFMKLGSMHSPFRARSEPEDPVTERSAFTERD
::::. :: ::: ::::: . ::::: : :
CCDS74 MKLGGTHSLFRACSEPEDAAMERSAFMELD
10 20 30
270 280 290 300 310 320
pF1KE6 AGNGLVTRLRERPALLVSSTSWTEDEDFSILLAALEKFEQLTLDGHNLPSLVCVITGKGP
::. :: .::: ::::::::.::: ::::::::::::::::::::
CCDS74 AGSRLVMHLREWPALLVSSTGWTE-------------FEQLTLDGHNLPSLVCVITG---
40 50 60 70
330 340 350 360 370 380
pF1KE6 LREYYSRLIHQKHFQHIQVCTPWLEAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFG
:.::::::: ::::::::::::::::
CCDS74 ----------------------------------SVDLGVCLHMSSSGLDLPMKVVDMFG
80 90 100
390 400 410 420 430 440
pF1KE6 CCLPVCAVNFKCLHELVKHEENGLVFEDSEELAAQLQMLFSNFPDPAGKLNQFRKNLRES
:::::::::::::::::::::::::::::::::: :::::::::::::::::: ::::::
CCDS74 CCLPVCAVNFKCLHELVKHEENGLVFEDSEELAA-LQMLFSNFPDPAGKLNQFWKNLRES
110 120 130 140 150
450 460
pF1KE6 QQLRWDESWVQTVLPLVMDT
:::::::::::::::::::
CCDS74 QQLRWDESWVQTVLPLVMDIQLLGQRLKPRDPCCPSRSFFSESQGKPF
160 170 180 190 200
464 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 13:20:06 2016 done: Tue Nov 8 13:20:07 2016
Total Scan time: 3.170 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]