Result of FASTA (ccds) for
pFN21AE6440
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6440, 575 aa
1>>>pF1KE6440 575 - 575 aa - 575 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4604+/-0.000914; mu= 17.9197+/- 0.055
mean_var=65.2845+/-13.174, 0's: 0 Z-trim(105.1): 22 B-trim: 387 in 1/47
Lambda= 0.158734
statistics sampled from 8259 (8271) to 8259 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.626), E-opt: 0.2 (0.254), width: 16
Scan time: 2.110
The best scores are: opt bits E(32554)
CCDS5448.1 AOAH gene_id:313|Hs108|chr7 ( 575) 3983 921.2 0
CCDS75584.1 AOAH gene_id:313|Hs108|chr7 ( 688) 3688 853.7 0
CCDS55102.1 AOAH gene_id:313|Hs108|chr7 ( 543) 3497 809.9 0
>>CCDS5448.1 AOAH gene_id:313|Hs108|chr7 (575 aa)
initn: 3983 init1: 3983 opt: 3983 Z-score: 4925.1 bits: 921.2 E(32554): 0
Smith-Waterman score: 3983; 100.0% identity (100.0% similar) in 575 aa overlap (1-575:1-575)
10 20 30 40 50 60
pF1KE6 MQSPWKILTVAPLFLLLSLQSSASPANDDQSRPSLSNGHTCVGCVLVVSVIEQLAQVHNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MQSPWKILTVAPLFLLLSLQSSASPANDDQSRPSLSNGHTCVGCVLVVSVIEQLAQVHNS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 TVQASMERLCSYLPEKLFLKTTCYLVIDKFGSDIIKLLSADMNADVVCHTLEFCKQNTGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TVQASMERLCSYLPEKLFLKTTCYLVIDKFGSDIIKLLSADMNADVVCHTLEFCKQNTGQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 PLCHLYPLPKETWKFTLQKARQIVKKSPILKYSRSGSDICSLPVLAKICQKIKLAMEQSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PLCHLYPLPKETWKFTLQKARQIVKKSPILKYSRSGSDICSLPVLAKICQKIKLAMEQSV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 PFKDVDSDKYSVFPTLRGYHWRGRDCNDSDESVYPGRRPNNWDVHQDSNCNGIWGVDPKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PFKDVDSDKYSVFPTLRGYHWRGRDCNDSDESVYPGRRPNNWDVHQDSNCNGIWGVDPKD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 GVPYEKKFCEGSQPRGIILLGDSAGAHFHISPEWITASQMSLNSFINLPTALTNELDWPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GVPYEKKFCEGSQPRGIILLGDSAGAHFHISPEWITASQMSLNSFINLPTALTNELDWPQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 LSGATGFLDSTVGIKEKSIYLRLWKRNHCNHRDYQNISRNGASSRNLKKFIESLSRNKVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LSGATGFLDSTVGIKEKSIYLRLWKRNHCNHRDYQNISRNGASSRNLKKFIESLSRNKVL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 DYPAIVIYAMIGNDVCSGKSDPVPAMTTPEKLYSNVMQTLKHLNSHLPNGSHVILYGLPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DYPAIVIYAMIGNDVCSGKSDPVPAMTTPEKLYSNVMQTLKHLNSHLPNGSHVILYGLPD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE6 GTFLWDNLHNRYHPLGQLNKDMTYAQLYSFLNCLQVSPCHGWMSSNKTLRTLTSERAEQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GTFLWDNLHNRYHPLGQLNKDMTYAQLYSFLNCLQVSPCHGWMSSNKTLRTLTSERAEQL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE6 SNTLKKIAASEKFTNFNLFYMDFAFHEIIQEWQKRGGQPWQLIEPVDGFHPNEVALLLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SNTLKKIAASEKFTNFNLFYMDFAFHEIIQEWQKRGGQPWQLIEPVDGFHPNEVALLLLA
490 500 510 520 530 540
550 560 570
pF1KE6 DHFWKKVQLQWPQILGKENPFNPQIKQVFGDQGGH
:::::::::::::::::::::::::::::::::::
CCDS54 DHFWKKVQLQWPQILGKENPFNPQIKQVFGDQGGH
550 560 570
>>CCDS75584.1 AOAH gene_id:313|Hs108|chr7 (688 aa)
initn: 3685 init1: 3685 opt: 3688 Z-score: 4558.8 bits: 853.7 E(32554): 0
Smith-Waterman score: 3688; 96.6% identity (97.5% similar) in 557 aa overlap (1-554:1-557)
10 20 30 40 50 60
pF1KE6 MQSPWKILTVAPLFLLLSLQSSASPANDDQSRPSLSNGHTCVGCVLVVSVIEQLAQVHNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MQSPWKILTVAPLFLLLSLQSSASPANDDQSRPSLSNGHTCVGCVLVVSVIEQLAQVHNS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 TVQASMERLCSYLPEKLFLKTTCYLVIDKFGSDIIKLLSADMNADVVCHTLEFCKQNTGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TVQASMERLCSYLPEKLFLKTTCYLVIDKFGSDIIKLLSADMNADVVCHTLEFCKQNTGQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 PLCHLYPLPKETWKFTLQKARQIVKKSPILKYSRSGSDICSLPVLAKICQKIKLAMEQSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PLCHLYPLPKETWKFTLQKARQIVKKSPILKYSRSGSDICSLPVLAKICQKIKLAMEQSV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 PFKDVDSDKYSVFPTLRGYHWRGRDCNDSDESVYPGRRPNNWDVHQDSNCNGIWGVDPKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PFKDVDSDKYSVFPTLRGYHWRGRDCNDSDESVYPGRRPNNWDVHQDSNCNGIWGVDPKD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 GVPYEKKFCEGSQPRGIILLGDSAGAHFHISPEWITASQMSLNSFINLPTALTNELDWPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GVPYEKKFCEGSQPRGIILLGDSAGAHFHISPEWITASQMSLNSFINLPTALTNELDWPQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 LSGATGFLDSTVGIKEKSIYLRLWKRNHCNHRDYQNISRNGASSRNLKKFIESLSRNKVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LSGATGFLDSTVGIKEKSIYLRLWKRNHCNHRDYQNISRNGASSRNLKKFIESLSRNKVL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 DYPAIVIYAMIGNDVCSGKSDPVPAMTTPEKLYSNVMQTLKHLNSHLPNGSHVILYGLPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DYPAIVIYAMIGNDVCSGKSDPVPAMTTPEKLYSNVMQTLKHLNSHLPNGSHVILYGLPD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE6 GTFLWDNLHNRYHPLGQLNKDMTYAQLYSFLNCLQVSPCHGWMSSNKTLRTLTSERAEQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GTFLWDNLHNRYHPLGQLNKDMTYAQLYSFLNCLQVSPCHGWMSSNKTLRTLTSERAEQL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE6 SNTLKKIAASEKFTNFNLFYMDFAFHEIIQEWQKRGGQPWQLIEPVDGFHPNEVALLLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::: .::
CCDS75 SNTLKKIAASEKFTNFNLFYMDFAFHEIIQEWQKRGGQPWQLIEPVDGFHPNERKSILLK
490 500 510 520 530 540
550 560 570
pF1KE6 DHFWKKVQL---QWPQILGKENPFNPQIKQVFGDQGGH
. . : .: :.
CCDS75 GILMTSQTLDNQEWTQLTSWIKGNLTCDSRTREWLCCCWRIISGKRCSSSGPKSWERRIR
550 560 570 580 590 600
>>CCDS55102.1 AOAH gene_id:313|Hs108|chr7 (543 aa)
initn: 3763 init1: 3497 opt: 3497 Z-score: 4324.0 bits: 809.9 E(32554): 0
Smith-Waterman score: 3703; 94.4% identity (94.4% similar) in 575 aa overlap (1-575:1-543)
10 20 30 40 50 60
pF1KE6 MQSPWKILTVAPLFLLLSLQSSASPANDDQSRPSLSNGHTCVGCVLVVSVIEQLAQVHNS
::::::::::::::::::::::::::::::::::::::::::
CCDS55 MQSPWKILTVAPLFLLLSLQSSASPANDDQSRPSLSNGHTCV------------------
10 20 30 40
70 80 90 100 110 120
pF1KE6 TVQASMERLCSYLPEKLFLKTTCYLVIDKFGSDIIKLLSADMNADVVCHTLEFCKQNTGQ
::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 --------------EKLFLKTTCYLVIDKFGSDIIKLLSADMNADVVCHTLEFCKQNTGQ
50 60 70 80
130 140 150 160 170 180
pF1KE6 PLCHLYPLPKETWKFTLQKARQIVKKSPILKYSRSGSDICSLPVLAKICQKIKLAMEQSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PLCHLYPLPKETWKFTLQKARQIVKKSPILKYSRSGSDICSLPVLAKICQKIKLAMEQSV
90 100 110 120 130 140
190 200 210 220 230 240
pF1KE6 PFKDVDSDKYSVFPTLRGYHWRGRDCNDSDESVYPGRRPNNWDVHQDSNCNGIWGVDPKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PFKDVDSDKYSVFPTLRGYHWRGRDCNDSDESVYPGRRPNNWDVHQDSNCNGIWGVDPKD
150 160 170 180 190 200
250 260 270 280 290 300
pF1KE6 GVPYEKKFCEGSQPRGIILLGDSAGAHFHISPEWITASQMSLNSFINLPTALTNELDWPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GVPYEKKFCEGSQPRGIILLGDSAGAHFHISPEWITASQMSLNSFINLPTALTNELDWPQ
210 220 230 240 250 260
310 320 330 340 350 360
pF1KE6 LSGATGFLDSTVGIKEKSIYLRLWKRNHCNHRDYQNISRNGASSRNLKKFIESLSRNKVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LSGATGFLDSTVGIKEKSIYLRLWKRNHCNHRDYQNISRNGASSRNLKKFIESLSRNKVL
270 280 290 300 310 320
370 380 390 400 410 420
pF1KE6 DYPAIVIYAMIGNDVCSGKSDPVPAMTTPEKLYSNVMQTLKHLNSHLPNGSHVILYGLPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DYPAIVIYAMIGNDVCSGKSDPVPAMTTPEKLYSNVMQTLKHLNSHLPNGSHVILYGLPD
330 340 350 360 370 380
430 440 450 460 470 480
pF1KE6 GTFLWDNLHNRYHPLGQLNKDMTYAQLYSFLNCLQVSPCHGWMSSNKTLRTLTSERAEQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GTFLWDNLHNRYHPLGQLNKDMTYAQLYSFLNCLQVSPCHGWMSSNKTLRTLTSERAEQL
390 400 410 420 430 440
490 500 510 520 530 540
pF1KE6 SNTLKKIAASEKFTNFNLFYMDFAFHEIIQEWQKRGGQPWQLIEPVDGFHPNEVALLLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SNTLKKIAASEKFTNFNLFYMDFAFHEIIQEWQKRGGQPWQLIEPVDGFHPNEVALLLLA
450 460 470 480 490 500
550 560 570
pF1KE6 DHFWKKVQLQWPQILGKENPFNPQIKQVFGDQGGH
:::::::::::::::::::::::::::::::::::
CCDS55 DHFWKKVQLQWPQILGKENPFNPQIKQVFGDQGGH
510 520 530 540
575 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 13:19:11 2016 done: Tue Nov 8 13:19:12 2016
Total Scan time: 2.110 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]