Result of FASTA (ccds) for
pFN21AE6438
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6438, 466 aa
1>>>pF1KE6438 466 - 466 aa - 466 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3923+/-0.00105; mu= 13.9776+/- 0.063
mean_var=106.4318+/-20.396, 0's: 0 Z-trim(107.1): 10 B-trim: 14 in 1/50
Lambda= 0.124319
statistics sampled from 9361 (9365) to 9361 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.288), width: 16
Scan time: 2.400
The best scores are: opt bits E(32554)
CCDS42405.1 CLUL1 gene_id:27098|Hs108|chr18 ( 466) 3152 576.1 2.6e-164
CCDS74187.1 CLUL1 gene_id:27098|Hs108|chr18 ( 518) 3152 576.2 2.8e-164
CCDS47832.1 CLU gene_id:1191|Hs108|chr8 ( 449) 332 70.3 4.6e-12
>>CCDS42405.1 CLUL1 gene_id:27098|Hs108|chr18 (466 aa)
initn: 3152 init1: 3152 opt: 3152 Z-score: 3063.4 bits: 576.1 E(32554): 2.6e-164
Smith-Waterman score: 3152; 100.0% identity (100.0% similar) in 466 aa overlap (1-466:1-466)
10 20 30 40 50 60
pF1KE6 MKPPLLVFIVCLLWLKDSHCAPTWKDKTAISENLKSFSEVGEIDADEEVKKALTGIKQMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MKPPLLVFIVCLLWLKDSHCAPTWKDKTAISENLKSFSEVGEIDADEEVKKALTGIKQMK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 IMMERKEKEHTNLMSTLKKCREEKQEALKLLNEVQEHLEEEERLCRESLADSWGECRSCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IMMERKEKEHTNLMSTLKKCREEKQEALKLLNEVQEHLEEEERLCRESLADSWGECRSCL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 ENNCMRIYTTCQPSWSSVKNKIERFFRKIYQFLFPFHEDNEKDLPISEKLIEEDAQLTQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ENNCMRIYTTCQPSWSSVKNKIERFFRKIYQFLFPFHEDNEKDLPISEKLIEEDAQLTQM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 EDVFSQLTVDVNSLFNRSFNVFRQMQQEFDQTFQSHFISDTDLTEPYFFPAFSKEPMTKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EDVFSQLTVDVNSLFNRSFNVFRQMQQEFDQTFQSHFISDTDLTEPYFFPAFSKEPMTKA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 DLEQCWDIPNFFQLFCNFSVSIYESVSETITKMLKAIEDLPKQDKAPDHGGLISKMLPGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DLEQCWDIPNFFQLFCNFSVSIYESVSETITKMLKAIEDLPKQDKAPDHGGLISKMLPGQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 DRGLCGELDQNLSRCFKFHEKCQKCQAHLSEDCPDVPALHTELDEAIRLVNVSNQQYGQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DRGLCGELDQNLSRCFKFHEKCQKCQAHLSEDCPDVPALHTELDEAIRLVNVSNQQYGQI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 LQMTRKHLEDTAYLVEKMRGQFGWVSELANQAPETEIIFNSIQVVPRIHEGNISKQDETM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LQMTRKHLEDTAYLVEKMRGQFGWVSELANQAPETEIIFNSIQVVPRIHEGNISKQDETM
370 380 390 400 410 420
430 440 450 460
pF1KE6 MTDLSILPSSNFTLKIPLEESAESSNFIGYVVAKALQHFKEHFKTW
::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MTDLSILPSSNFTLKIPLEESAESSNFIGYVVAKALQHFKEHFKTW
430 440 450 460
>>CCDS74187.1 CLUL1 gene_id:27098|Hs108|chr18 (518 aa)
initn: 3152 init1: 3152 opt: 3152 Z-score: 3062.7 bits: 576.2 E(32554): 2.8e-164
Smith-Waterman score: 3152; 100.0% identity (100.0% similar) in 466 aa overlap (1-466:53-518)
10 20 30
pF1KE6 MKPPLLVFIVCLLWLKDSHCAPTWKDKTAI
::::::::::::::::::::::::::::::
CCDS74 LSSLQPLPPRFKRFSCLSLSSGWDYSNSGNMKPPLLVFIVCLLWLKDSHCAPTWKDKTAI
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE6 SENLKSFSEVGEIDADEEVKKALTGIKQMKIMMERKEKEHTNLMSTLKKCREEKQEALKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SENLKSFSEVGEIDADEEVKKALTGIKQMKIMMERKEKEHTNLMSTLKKCREEKQEALKL
90 100 110 120 130 140
100 110 120 130 140 150
pF1KE6 LNEVQEHLEEEERLCRESLADSWGECRSCLENNCMRIYTTCQPSWSSVKNKIERFFRKIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LNEVQEHLEEEERLCRESLADSWGECRSCLENNCMRIYTTCQPSWSSVKNKIERFFRKIY
150 160 170 180 190 200
160 170 180 190 200 210
pF1KE6 QFLFPFHEDNEKDLPISEKLIEEDAQLTQMEDVFSQLTVDVNSLFNRSFNVFRQMQQEFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QFLFPFHEDNEKDLPISEKLIEEDAQLTQMEDVFSQLTVDVNSLFNRSFNVFRQMQQEFD
210 220 230 240 250 260
220 230 240 250 260 270
pF1KE6 QTFQSHFISDTDLTEPYFFPAFSKEPMTKADLEQCWDIPNFFQLFCNFSVSIYESVSETI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QTFQSHFISDTDLTEPYFFPAFSKEPMTKADLEQCWDIPNFFQLFCNFSVSIYESVSETI
270 280 290 300 310 320
280 290 300 310 320 330
pF1KE6 TKMLKAIEDLPKQDKAPDHGGLISKMLPGQDRGLCGELDQNLSRCFKFHEKCQKCQAHLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TKMLKAIEDLPKQDKAPDHGGLISKMLPGQDRGLCGELDQNLSRCFKFHEKCQKCQAHLS
330 340 350 360 370 380
340 350 360 370 380 390
pF1KE6 EDCPDVPALHTELDEAIRLVNVSNQQYGQILQMTRKHLEDTAYLVEKMRGQFGWVSELAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 EDCPDVPALHTELDEAIRLVNVSNQQYGQILQMTRKHLEDTAYLVEKMRGQFGWVSELAN
390 400 410 420 430 440
400 410 420 430 440 450
pF1KE6 QAPETEIIFNSIQVVPRIHEGNISKQDETMMTDLSILPSSNFTLKIPLEESAESSNFIGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QAPETEIIFNSIQVVPRIHEGNISKQDETMMTDLSILPSSNFTLKIPLEESAESSNFIGY
450 460 470 480 490 500
460
pF1KE6 VVAKALQHFKEHFKTW
::::::::::::::::
CCDS74 VVAKALQHFKEHFKTW
510
>>CCDS47832.1 CLU gene_id:1191|Hs108|chr8 (449 aa)
initn: 274 init1: 120 opt: 332 Z-score: 330.1 bits: 70.3 E(32554): 4.6e-12
Smith-Waterman score: 566; 25.8% identity (60.3% similar) in 476 aa overlap (1-464:1-447)
10 20 30 40 50
pF1KE6 MKPPLLVFIVCLL-WLKDSHCAPTWKDKTAISENLKSFSEVGEIDADEEVKKALTGIKQM
: ::.:. :: : . . . :.:. ...:. .:. : ...:...:..:.::.
CCDS47 MMKTLLLFVGLLLTW----ESGQVLGDQTVSDNELQEMSNQGSKYVNKEIQNAVNGVKQI
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 KIMMERKEKEHTNLMSTLKKCREEKQEALKLLNEVQEHLEEEERLCRESLADSWGECRSC
: ..:. ..:. .:.:.:.. ...:..::. : . .:.: .: :.. : ::. :
CCDS47 KTLIEKTNEERKTLLSNLEEAKKKKEDALNETRESETKLKELPGVCNETMMALWEECKPC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE6 LENNCMRIYT-TCQPSWSSVKNKIERFFRKIYQFLFPFHEDNEKDLPISEKLIEEDAQLT
:...::..:. .:. . . : ..:.:. . : : .. : ..:.:.: : :
CCDS47 LKQTCMKFYARVCRSGSGLVGRQLEEFLNQSSPFYFWMNGDR------IDSLLENDRQQT
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE6 QMEDV----FSQLTVDVNSLFNRSFNVFRQMQQEFDQTFQSHFIS-DTDLTEPYFFPAFS
.: :: ::. . .. ::. : : . :. :. :.. . .:.:: :
CCDS47 HMLDVMQDHFSRASSIIDELFQDRF--FTREPQD---TY--HYLPFSLPHRRPHFF--FP
180 190 200 210 220
240 250 260 270 280 290
pF1KE6 KEPMTKADLEQCWDIP-NFFQLFCNFSVSIYESVSETITKMLKAIEDLPKQDKAPDHGGL
: .... . : :: .: : :.:. . :. .. : .:
CCDS47 KSRIVRSLMPFSPYEPLNFHAMFQPFLEMIHEA---------QQAMDIHFHSPAFQHPPT
230 240 250 260 270
300 310 320 330 340
pF1KE6 ISKMLPGQDRGLCGELDQNLSRCFKFHEKCQKCQAHLSEDC----PDVPALHTELDEAIR
.:: .: :. .: . :......:.::. :: :: :. :. ::::...
CCDS47 EFIREGDDDRTVCREIRHNSTGCLRMKDQCDKCREILSVDCSTNNPSQAKLRRELDESLQ
280 290 300 310 320 330
350 360 370 380 390 400
pF1KE6 LVNVSNQQYGQILQMTRKHLEDTAYLVEKMRGQFGWVSELANQAPETEIIFNSIQVVPRI
... ...:...:. . .. .:. :.:.. ::.:::.::: . . . . .:
CCDS47 VAERLTRKYNELLKSYQWKMLNTSSLLEQLNEQFNWVSRLANLTQGEDQYYLRVTTVAS-
340 350 360 370 380 390
410 420 430 440 450 460
pF1KE6 HEGNISKQDETMMTDLSILPSSNFTLKIPLEESAESSNFIGYVVAKALQHFKEHFKTW
: .. . . . . .... :. .:. .:.: : .. .:. :. ::::..... .
CCDS47 HTSDSDVPSGVTEVVVKLFDSDPITVTVPVEVSRKNPKFMETVAEKALQEYRKKHREE
400 410 420 430 440
466 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 13:17:51 2016 done: Tue Nov 8 13:17:51 2016
Total Scan time: 2.400 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]