Result of FASTA (omim) for
pFN21AE6431
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6431, 460 aa
1>>>pF1KE6431 460 - 460 aa - 460 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0329+/-0.000362; mu= 21.4000+/- 0.023
mean_var=88.4791+/-17.723, 0's: 0 Z-trim(114.2): 45 B-trim: 58 in 1/54
Lambda= 0.136350
statistics sampled from 23942 (23977) to 23942 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.281), width: 16
Scan time: 5.970
The best scores are: opt bits E(85289)
NP_057305 (OMIM: 614758) dynactin subunit 4 isofor ( 460) 3095 618.9 8.9e-177
NP_001129115 (OMIM: 614758) dynactin subunit 4 iso ( 467) 3071 614.2 2.4e-175
XP_011535946 (OMIM: 614758) PREDICTED: dynactin su ( 403) 2701 541.3 1.7e-153
NP_001129116 (OMIM: 614758) dynactin subunit 4 iso ( 403) 2701 541.3 1.7e-153
XP_011535947 (OMIM: 614758) PREDICTED: dynactin su ( 403) 2701 541.3 1.7e-153
XP_011535948 (OMIM: 614758) PREDICTED: dynactin su ( 381) 2528 507.3 2.9e-143
XP_005268514 (OMIM: 614758) PREDICTED: dynactin su ( 317) 2092 421.4 1.7e-117
XP_011535949 (OMIM: 614758) PREDICTED: dynactin su ( 317) 2092 421.4 1.7e-117
>>NP_057305 (OMIM: 614758) dynactin subunit 4 isoform b (460 aa)
initn: 3095 init1: 3095 opt: 3095 Z-score: 3294.7 bits: 618.9 E(85289): 8.9e-177
Smith-Waterman score: 3095; 99.8% identity (99.8% similar) in 460 aa overlap (1-460:1-460)
10 20 30 40 50 60
pF1KE6 MASLLQSDRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MASLLQSDRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLTDDPAKTTMKKAYYLACGFCRWTSRD
:::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::
NP_057 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 VGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLAFSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLAFSD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 KYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYYTRPVNLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 KYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYYTRPVNLT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 EVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 EVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 VAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDINSTAKVVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDINSTAKVVV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 PPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEGEVTVCFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 PPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEGEVTVCFK
370 380 390 400 410 420
430 440 450 460
pF1KE6 MKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP
::::::::::::::::::::::::::::::::::::::::
NP_057 MKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP
430 440 450 460
>>NP_001129115 (OMIM: 614758) dynactin subunit 4 isoform (467 aa)
initn: 3081 init1: 1860 opt: 3071 Z-score: 3269.1 bits: 614.2 E(85289): 2.4e-175
Smith-Waterman score: 3071; 98.3% identity (98.3% similar) in 467 aa overlap (1-460:1-467)
10 20 30 40 50 60
pF1KE6 MASLLQSDRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASLLQSDRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLTDDPAKTTMKKAYYLACGFCRWTSRD
:::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::
NP_001 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRD
70 80 90 100 110 120
130 140 150 160 170
pF1KE6 VGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLAFS-
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLAFSQ
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE6 ------DKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HTIHVVDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYY
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE6 TRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTS
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE6 IKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDIN
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE6 STAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEG
370 380 390 400 410 420
420 430 440 450 460
pF1KE6 EVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP
430 440 450 460
>>XP_011535946 (OMIM: 614758) PREDICTED: dynactin subuni (403 aa)
initn: 2701 init1: 2701 opt: 2701 Z-score: 2876.5 bits: 541.3 E(85289): 1.7e-153
Smith-Waterman score: 2701; 99.8% identity (99.8% similar) in 403 aa overlap (58-460:1-403)
30 40 50 60 70 80
pF1KE6 YFCRYCSELRSLECVSHEVDSHYCPSCLENMPSAEAKLKKNRCANCFDCPGCMHTLSTRA
::::::::::::::::::::::::::::::
XP_011 MPSAEAKLKKNRCANCFDCPGCMHTLSTRA
10 20 30
90 100 110 120 130 140
pF1KE6 TSISTQLTDDPAKTTMKKAYYLACGFCRWTSRDVGMADKSVASGGWQEPENPHTQRMNKL
::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TSISTQLPDDPAKTTMKKAYYLACGFCRWTSRDVGMADKSVASGGWQEPENPHTQRMNKL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE6 IEYYQQLAQKEKVERDRKKLARRRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IEYYQQLAQKEKVERDRKKLARRRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKE
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE6 GEDQKEIKIEPAQAVDEVEPLPEDYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GEDQKEIKIEPAQAVDEVEPLPEDYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHK
160 170 180 190 200 210
270 280 290 300 310 320
pF1KE6 HLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLL
220 230 240 250 260 270
330 340 350 360 370 380
pF1KE6 TLTNPVENLTHVTLFECEEGDPDDINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TLTNPVENLTHVTLFECEEGDPDDINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQD
280 290 300 310 320 330
390 400 410 420 430 440
pF1KE6 DPDIIAFRKANKVGIFIKVTPQREEGEVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DPDIIAFRKANKVGIFIKVTPQREEGEVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWL
340 350 360 370 380 390
450 460
pF1KE6 TQHVELSLGPLLP
:::::::::::::
XP_011 TQHVELSLGPLLP
400
>>NP_001129116 (OMIM: 614758) dynactin subunit 4 isoform (403 aa)
initn: 2701 init1: 2701 opt: 2701 Z-score: 2876.5 bits: 541.3 E(85289): 1.7e-153
Smith-Waterman score: 2701; 99.8% identity (99.8% similar) in 403 aa overlap (58-460:1-403)
30 40 50 60 70 80
pF1KE6 YFCRYCSELRSLECVSHEVDSHYCPSCLENMPSAEAKLKKNRCANCFDCPGCMHTLSTRA
::::::::::::::::::::::::::::::
NP_001 MPSAEAKLKKNRCANCFDCPGCMHTLSTRA
10 20 30
90 100 110 120 130 140
pF1KE6 TSISTQLTDDPAKTTMKKAYYLACGFCRWTSRDVGMADKSVASGGWQEPENPHTQRMNKL
::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSISTQLPDDPAKTTMKKAYYLACGFCRWTSRDVGMADKSVASGGWQEPENPHTQRMNKL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE6 IEYYQQLAQKEKVERDRKKLARRRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IEYYQQLAQKEKVERDRKKLARRRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKE
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE6 GEDQKEIKIEPAQAVDEVEPLPEDYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEDQKEIKIEPAQAVDEVEPLPEDYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHK
160 170 180 190 200 210
270 280 290 300 310 320
pF1KE6 HLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLL
220 230 240 250 260 270
330 340 350 360 370 380
pF1KE6 TLTNPVENLTHVTLFECEEGDPDDINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLTNPVENLTHVTLFECEEGDPDDINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQD
280 290 300 310 320 330
390 400 410 420 430 440
pF1KE6 DPDIIAFRKANKVGIFIKVTPQREEGEVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPDIIAFRKANKVGIFIKVTPQREEGEVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWL
340 350 360 370 380 390
450 460
pF1KE6 TQHVELSLGPLLP
:::::::::::::
NP_001 TQHVELSLGPLLP
400
>>XP_011535947 (OMIM: 614758) PREDICTED: dynactin subuni (403 aa)
initn: 2701 init1: 2701 opt: 2701 Z-score: 2876.5 bits: 541.3 E(85289): 1.7e-153
Smith-Waterman score: 2701; 99.8% identity (99.8% similar) in 403 aa overlap (58-460:1-403)
30 40 50 60 70 80
pF1KE6 YFCRYCSELRSLECVSHEVDSHYCPSCLENMPSAEAKLKKNRCANCFDCPGCMHTLSTRA
::::::::::::::::::::::::::::::
XP_011 MPSAEAKLKKNRCANCFDCPGCMHTLSTRA
10 20 30
90 100 110 120 130 140
pF1KE6 TSISTQLTDDPAKTTMKKAYYLACGFCRWTSRDVGMADKSVASGGWQEPENPHTQRMNKL
::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TSISTQLPDDPAKTTMKKAYYLACGFCRWTSRDVGMADKSVASGGWQEPENPHTQRMNKL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE6 IEYYQQLAQKEKVERDRKKLARRRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IEYYQQLAQKEKVERDRKKLARRRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKE
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE6 GEDQKEIKIEPAQAVDEVEPLPEDYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GEDQKEIKIEPAQAVDEVEPLPEDYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHK
160 170 180 190 200 210
270 280 290 300 310 320
pF1KE6 HLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLL
220 230 240 250 260 270
330 340 350 360 370 380
pF1KE6 TLTNPVENLTHVTLFECEEGDPDDINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TLTNPVENLTHVTLFECEEGDPDDINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQD
280 290 300 310 320 330
390 400 410 420 430 440
pF1KE6 DPDIIAFRKANKVGIFIKVTPQREEGEVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DPDIIAFRKANKVGIFIKVTPQREEGEVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWL
340 350 360 370 380 390
450 460
pF1KE6 TQHVELSLGPLLP
:::::::::::::
XP_011 TQHVELSLGPLLP
400
>>XP_011535948 (OMIM: 614758) PREDICTED: dynactin subuni (381 aa)
initn: 2528 init1: 2528 opt: 2528 Z-score: 2692.9 bits: 507.3 E(85289): 2.9e-143
Smith-Waterman score: 2528; 99.7% identity (99.7% similar) in 381 aa overlap (80-460:1-381)
50 60 70 80 90 100
pF1KE6 YCPSCLENMPSAEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLTDDPAKTTMKKAYYL
::::::::::::::: ::::::::::::::
XP_011 MHTLSTRATSISTQLPDDPAKTTMKKAYYL
10 20 30
110 120 130 140 150 160
pF1KE6 ACGFCRWTSRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ACGFCRWTSRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLAR
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE6 RRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLP
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE6 EDYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EDYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEF
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE6 NPTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NPTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDP
220 230 240 250 260 270
350 360 370 380 390 400
pF1KE6 DDINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DDINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQ
280 290 300 310 320 330
410 420 430 440 450 460
pF1KE6 REEGEVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REEGEVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP
340 350 360 370 380
>>XP_005268514 (OMIM: 614758) PREDICTED: dynactin subuni (317 aa)
initn: 2092 init1: 2092 opt: 2092 Z-score: 2230.4 bits: 421.4 E(85289): 1.7e-117
Smith-Waterman score: 2092; 100.0% identity (100.0% similar) in 317 aa overlap (144-460:1-317)
120 130 140 150 160 170
pF1KE6 CRWTSRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNY
::::::::::::::::::::::::::::::
XP_005 MNKLIEYYQQLAQKEKVERDRKKLARRRNY
10 20 30
180 190 200 210 220 230
pF1KE6 MPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYY
40 50 60 70 80 90
240 250 260 270 280 290
pF1KE6 TRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTS
100 110 120 130 140 150
300 310 320 330 340 350
pF1KE6 IKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDIN
160 170 180 190 200 210
360 370 380 390 400 410
pF1KE6 STAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 STAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEG
220 230 240 250 260 270
420 430 440 450 460
pF1KE6 EVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP
:::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP
280 290 300 310
>>XP_011535949 (OMIM: 614758) PREDICTED: dynactin subuni (317 aa)
initn: 2092 init1: 2092 opt: 2092 Z-score: 2230.4 bits: 421.4 E(85289): 1.7e-117
Smith-Waterman score: 2092; 100.0% identity (100.0% similar) in 317 aa overlap (144-460:1-317)
120 130 140 150 160 170
pF1KE6 CRWTSRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNY
::::::::::::::::::::::::::::::
XP_011 MNKLIEYYQQLAQKEKVERDRKKLARRRNY
10 20 30
180 190 200 210 220 230
pF1KE6 MPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYY
40 50 60 70 80 90
240 250 260 270 280 290
pF1KE6 TRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTS
100 110 120 130 140 150
300 310 320 330 340 350
pF1KE6 IKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDIN
160 170 180 190 200 210
360 370 380 390 400 410
pF1KE6 STAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 STAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEG
220 230 240 250 260 270
420 430 440 450 460
pF1KE6 EVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP
:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP
280 290 300 310
460 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 13:14:15 2016 done: Tue Nov 8 13:14:16 2016
Total Scan time: 5.970 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]