Result of FASTA (ccds) for
pFN21AE6421
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6421, 558 aa
1>>>pF1KE6421 558 - 558 aa - 558 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6217+/-0.000895; mu= 17.4681+/- 0.054
mean_var=75.7566+/-15.061, 0's: 0 Z-trim(106.8): 20 B-trim: 0 in 0/51
Lambda= 0.147355
statistics sampled from 9202 (9208) to 9202 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.283), width: 16
Scan time: 2.190
The best scores are: opt bits E(32554)
CCDS12379.1 ISYNA1 gene_id:51477|Hs108|chr19 ( 558) 3724 801.3 0
CCDS54234.1 ISYNA1 gene_id:51477|Hs108|chr19 ( 504) 3114 671.6 6.1e-193
CCDS62603.1 ISYNA1 gene_id:51477|Hs108|chr19 ( 430) 2891 624.2 1e-178
>>CCDS12379.1 ISYNA1 gene_id:51477|Hs108|chr19 (558 aa)
initn: 3724 init1: 3724 opt: 3724 Z-score: 4277.5 bits: 801.3 E(32554): 0
Smith-Waterman score: 3724; 100.0% identity (100.0% similar) in 558 aa overlap (1-558:1-558)
10 20 30 40 50 60
pF1KE6 MEAAAQFFVESPDVVYGPEAIEAQYEYRTTRVSREGGVLKVHPTSTRFTFRTARQVPRLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MEAAAQFFVESPDVVYGPEAIEAQYEYRTTRVSREGGVLKVHPTSTRFTFRTARQVPRLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 VMLVGWGGNNGSTLTAAVLANRLRLSWPTRSGRKEANYYGSLTQAGTVSLGLDAEGQEVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VMLVGWGGNNGSTLTAAVLANRLRLSWPTRSGRKEANYYGSLTQAGTVSLGLDAEGQEVF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 VPFSAVLPMVAPNDLVFDGWDISSLNLAEAMRRAKVLDWGLQEQLWPHMEALRPRPSVYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VPFSAVLPMVAPNDLVFDGWDISSLNLAEAMRRAKVLDWGLQEQLWPHMEALRPRPSVYI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 PEFIAANQSARADNLIPGSRAQQLEQIRRDIRDFRSSAGLDKVIVLWTANTERFCEVIPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PEFIAANQSARADNLIPGSRAQQLEQIRRDIRDFRSSAGLDKVIVLWTANTERFCEVIPG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 LNDTAENLLRTIELGLEVSPSTLFAVASILEGCAFLNGSPQNTLVPGALELAWQHRVFVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LNDTAENLLRTIELGLEVSPSTLFAVASILEGCAFLNGSPQNTLVPGALELAWQHRVFVG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 GDDFKSGQTKVKSVLVDFLIGSGLKTMSIVSYNHLGNNDGENLSAPLQFRSKEVSKSNVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GDDFKSGQTKVKSVLVDFLIGSGLKTMSIVSYNHLGNNDGENLSAPLQFRSKEVSKSNVV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 DDMVQSNPVLYTPGEEPDHCVVIKYVPYVGDSKRALDEYTSELMLGGTNTLVLHNTCEDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DDMVQSNPVLYTPGEEPDHCVVIKYVPYVGDSKRALDEYTSELMLGGTNTLVLHNTCEDS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE6 LLAAPIMLDLALLTELCQRVSFCTDMDPEPQTFHPVLSLLSFLFKAPLVPPGSPVVNALF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LLAAPIMLDLALLTELCQRVSFCTDMDPEPQTFHPVLSLLSFLFKAPLVPPGSPVVNALF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE6 RQRSCIENILRACVGLPPQNHMLLEHKMERPGPSLKRVGPVAATYPMLNKKGPVPAATNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RQRSCIENILRACVGLPPQNHMLLEHKMERPGPSLKRVGPVAATYPMLNKKGPVPAATNG
490 500 510 520 530 540
550
pF1KE6 CTGDANGHLQEEPPMPTT
::::::::::::::::::
CCDS12 CTGDANGHLQEEPPMPTT
550
>>CCDS54234.1 ISYNA1 gene_id:51477|Hs108|chr19 (504 aa)
initn: 3113 init1: 3113 opt: 3114 Z-score: 3577.3 bits: 671.6 E(32554): 6.1e-193
Smith-Waterman score: 3245; 90.3% identity (90.3% similar) in 558 aa overlap (1-558:1-504)
10 20 30 40 50 60
pF1KE6 MEAAAQFFVESPDVVYGPEAIEAQYEYRTTRVSREGGVLKVHPTSTRFTFRTARQVPRLG
::::::::::::::::::::::::::::::::::::::::
CCDS54 MEAAAQFFVESPDVVYGPEAIEAQYEYRTTRVSREGGVLK--------------------
10 20 30 40
70 80 90 100 110 120
pF1KE6 VMLVGWGGNNGSTLTAAVLANRLRLSWPTRSGRKEANYYGSLTQAGTVSLGLDAEGQEVF
::::::::::::::::::::::::::
CCDS54 ----------------------------------EANYYGSLTQAGTVSLGLDAEGQEVF
50 60
130 140 150 160 170 180
pF1KE6 VPFSAVLPMVAPNDLVFDGWDISSLNLAEAMRRAKVLDWGLQEQLWPHMEALRPRPSVYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VPFSAVLPMVAPNDLVFDGWDISSLNLAEAMRRAKVLDWGLQEQLWPHMEALRPRPSVYI
70 80 90 100 110 120
190 200 210 220 230 240
pF1KE6 PEFIAANQSARADNLIPGSRAQQLEQIRRDIRDFRSSAGLDKVIVLWTANTERFCEVIPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PEFIAANQSARADNLIPGSRAQQLEQIRRDIRDFRSSAGLDKVIVLWTANTERFCEVIPG
130 140 150 160 170 180
250 260 270 280 290 300
pF1KE6 LNDTAENLLRTIELGLEVSPSTLFAVASILEGCAFLNGSPQNTLVPGALELAWQHRVFVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LNDTAENLLRTIELGLEVSPSTLFAVASILEGCAFLNGSPQNTLVPGALELAWQHRVFVG
190 200 210 220 230 240
310 320 330 340 350 360
pF1KE6 GDDFKSGQTKVKSVLVDFLIGSGLKTMSIVSYNHLGNNDGENLSAPLQFRSKEVSKSNVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GDDFKSGQTKVKSVLVDFLIGSGLKTMSIVSYNHLGNNDGENLSAPLQFRSKEVSKSNVV
250 260 270 280 290 300
370 380 390 400 410 420
pF1KE6 DDMVQSNPVLYTPGEEPDHCVVIKYVPYVGDSKRALDEYTSELMLGGTNTLVLHNTCEDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DDMVQSNPVLYTPGEEPDHCVVIKYVPYVGDSKRALDEYTSELMLGGTNTLVLHNTCEDS
310 320 330 340 350 360
430 440 450 460 470 480
pF1KE6 LLAAPIMLDLALLTELCQRVSFCTDMDPEPQTFHPVLSLLSFLFKAPLVPPGSPVVNALF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LLAAPIMLDLALLTELCQRVSFCTDMDPEPQTFHPVLSLLSFLFKAPLVPPGSPVVNALF
370 380 390 400 410 420
490 500 510 520 530 540
pF1KE6 RQRSCIENILRACVGLPPQNHMLLEHKMERPGPSLKRVGPVAATYPMLNKKGPVPAATNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RQRSCIENILRACVGLPPQNHMLLEHKMERPGPSLKRVGPVAATYPMLNKKGPVPAATNG
430 440 450 460 470 480
550
pF1KE6 CTGDANGHLQEEPPMPTT
::::::::::::::::::
CCDS54 CTGDANGHLQEEPPMPTT
490 500
>>CCDS62603.1 ISYNA1 gene_id:51477|Hs108|chr19 (430 aa)
initn: 2891 init1: 2891 opt: 2891 Z-score: 3322.1 bits: 624.2 E(32554): 1e-178
Smith-Waterman score: 2891; 100.0% identity (100.0% similar) in 430 aa overlap (129-558:1-430)
100 110 120 130 140 150
pF1KE6 YGSLTQAGTVSLGLDAEGQEVFVPFSAVLPMVAPNDLVFDGWDISSLNLAEAMRRAKVLD
::::::::::::::::::::::::::::::
CCDS62 MVAPNDLVFDGWDISSLNLAEAMRRAKVLD
10 20 30
160 170 180 190 200 210
pF1KE6 WGLQEQLWPHMEALRPRPSVYIPEFIAANQSARADNLIPGSRAQQLEQIRRDIRDFRSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 WGLQEQLWPHMEALRPRPSVYIPEFIAANQSARADNLIPGSRAQQLEQIRRDIRDFRSSA
40 50 60 70 80 90
220 230 240 250 260 270
pF1KE6 GLDKVIVLWTANTERFCEVIPGLNDTAENLLRTIELGLEVSPSTLFAVASILEGCAFLNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 GLDKVIVLWTANTERFCEVIPGLNDTAENLLRTIELGLEVSPSTLFAVASILEGCAFLNG
100 110 120 130 140 150
280 290 300 310 320 330
pF1KE6 SPQNTLVPGALELAWQHRVFVGGDDFKSGQTKVKSVLVDFLIGSGLKTMSIVSYNHLGNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SPQNTLVPGALELAWQHRVFVGGDDFKSGQTKVKSVLVDFLIGSGLKTMSIVSYNHLGNN
160 170 180 190 200 210
340 350 360 370 380 390
pF1KE6 DGENLSAPLQFRSKEVSKSNVVDDMVQSNPVLYTPGEEPDHCVVIKYVPYVGDSKRALDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 DGENLSAPLQFRSKEVSKSNVVDDMVQSNPVLYTPGEEPDHCVVIKYVPYVGDSKRALDE
220 230 240 250 260 270
400 410 420 430 440 450
pF1KE6 YTSELMLGGTNTLVLHNTCEDSLLAAPIMLDLALLTELCQRVSFCTDMDPEPQTFHPVLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 YTSELMLGGTNTLVLHNTCEDSLLAAPIMLDLALLTELCQRVSFCTDMDPEPQTFHPVLS
280 290 300 310 320 330
460 470 480 490 500 510
pF1KE6 LLSFLFKAPLVPPGSPVVNALFRQRSCIENILRACVGLPPQNHMLLEHKMERPGPSLKRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 LLSFLFKAPLVPPGSPVVNALFRQRSCIENILRACVGLPPQNHMLLEHKMERPGPSLKRV
340 350 360 370 380 390
520 530 540 550
pF1KE6 GPVAATYPMLNKKGPVPAATNGCTGDANGHLQEEPPMPTT
::::::::::::::::::::::::::::::::::::::::
CCDS62 GPVAATYPMLNKKGPVPAATNGCTGDANGHLQEEPPMPTT
400 410 420 430
558 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 13:07:45 2016 done: Tue Nov 8 13:07:45 2016
Total Scan time: 2.190 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]