FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6416, 549 aa
  1>>>pF1KE6416 549 - 549 aa - 549 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4190+/-0.00091; mu= 17.4128+/- 0.054
 mean_var=57.7241+/-11.649, 0's: 0 Z-trim(104.7): 22  B-trim: 0 in 0/48
 Lambda= 0.168809
 statistics sampled from 8030 (8038) to 8030 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.61), E-opt: 0.2 (0.247), width:  16
 Scan time:  3.100

The best scores are:                                      opt bits E(32554)
CCDS3173.1 SLC33A1 gene_id:9197|Hs108|chr3         ( 549) 3662 900.3       0


>>CCDS3173.1 SLC33A1 gene_id:9197|Hs108|chr3              (549 aa)
 initn: 3662 init1: 3662 opt: 3662  Z-score: 4812.9  bits: 900.3 E(32554):    0
Smith-Waterman score: 3662; 100.0% identity (100.0% similar) in 549 aa overlap (1-549:1-549)

               10        20        30        40        50        60
pF1KE6 MSPTISHKDSSRQRRPGNFSHSLDMKSGPLPPGGWDDSHLDSAGREGDREALLGDTGTGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MSPTISHKDSSRQRRPGNFSHSLDMKSGPLPPGGWDDSHLDSAGREGDREALLGDTGTGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 FLKAPQSFRAELSSILLLLFLYVLQGIPLGLAGSIPLILQSKNVSYTDQAFFSFVFWPFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FLKAPQSFRAELSSILLLLFLYVLQGIPLGLAGSIPLILQSKNVSYTDQAFFSFVFWPFS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LKLLWAPLVDAVYVKNFGRRKSWLVPTQYILGLFMIYLSTQVDRLLGNTDDRTPDVIALT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LKLLWAPLVDAVYVKNFGRRKSWLVPTQYILGLFMIYLSTQVDRLLGNTDDRTPDVIALT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 VAFFLFEFLAATQDIAVDGWALTMLSRENVGYASTCNSVGQTAGYFLGNVLFLALESADF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VAFFLFEFLAATQDIAVDGWALTMLSRENVGYASTCNSVGQTAGYFLGNVLFLALESADF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 CNKYLRFQPQPRGIVTLSDFLFFWGTVFLITTTLVALLKKENEVSVVKEETQGITDTYKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 CNKYLRFQPQPRGIVTLSDFLFFWGTVFLITTTLVALLKKENEVSVVKEETQGITDTYKL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 LFAIIKMPAVLTFCLLILTAKIGFSAADAVTGLKLVEEGVPKEHLALLAVPMVPLQIILP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LFAIIKMPAVLTFCLLILTAKIGFSAADAVTGLKLVEEGVPKEHLALLAVPMVPLQIILP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 LIISKYTAGPQPLNTFYKAMPYRLLLGLEYALLVWWTPKVEHQGGFPIYYYIVVLLSYAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LIISKYTAGPQPLNTFYKAMPYRLLLGLEYALLVWWTPKVEHQGGFPIYYYIVVLLSYAL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE6 HQVTVYSMYVSIMAFNAKVSDPLIGGTYMTLLNTVSNLGGNWPSTVALWLVDPLTVKECV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 HQVTVYSMYVSIMAFNAKVSDPLIGGTYMTLLNTVSNLGGNWPSTVALWLVDPLTVKECV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE6 GASNQNCRTPDAVELCKKLGGSCVTALDGYYVESIICVFIGFGWWFFLGPKFKKLQDEGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GASNQNCRTPDAVELCKKLGGSCVTALDGYYVESIICVFIGFGWWFFLGPKFKKLQDEGS
              490       500       510       520       530       540

                
pF1KE6 SSWKCKRNN
       :::::::::
CCDS31 SSWKCKRNN
                




549 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:04:16 2016 done: Tue Nov  8 13:04:16 2016
 Total Scan time:  3.100 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]