FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6394, 343 aa
  1>>>pF1KE6394 343 - 343 aa - 343 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6347+/-0.000327; mu= 16.3493+/- 0.020
 mean_var=94.5549+/-18.893, 0's: 0 Z-trim(117.1): 3  B-trim: 33 in 1/54
 Lambda= 0.131896
 statistics sampled from 28746 (28747) to 28746 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.337), width:  16
 Scan time:  5.300

The best scores are:                                      opt bits E(85289)
NP_690005 (OMIM: 611765) retroviral-like aspartic  ( 343) 2267 441.3 1.5e-123


>>NP_690005 (OMIM: 611765) retroviral-like aspartic prot  (343 aa)
 initn: 2267 init1: 2267 opt: 2267  Z-score: 2339.2  bits: 441.3 E(85289): 1.5e-123
Smith-Waterman score: 2267; 100.0% identity (100.0% similar) in 343 aa overlap (1-343:1-343)

               10        20        30        40        50        60
pF1KE6 MGSPGASLGIKKALQSEQATALPASAPAVSQPTAPAPSCLPKAGQVIPTLLREAPFSSVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_690 MGSPGASLGIKKALQSEQATALPASAPAVSQPTAPAPSCLPKAGQVIPTLLREAPFSSVI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 APTLLCGFLFLAWVAAEVPEESSRMAGSGARSEEGRRQHAFVPEPFDGANVVPNLWLHSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_690 APTLLCGFLFLAWVAAEVPEESSRMAGSGARSEEGRRQHAFVPEPFDGANVVPNLWLHSF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 EVINDLNHWDHITKLRFLKESLRGEALGVYNRLSPQDQGDYGTVKEALLKAFGVPGAAPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_690 EVINDLNHWDHITKLRFLKESLRGEALGVYNRLSPQDQGDYGTVKEALLKAFGVPGAAPS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 HLPKEIVFANSMGKGYYLKGKIGKVPVRFLVDSGAQVSVVHPNLWEEVTDGDLDTLQPFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_690 HLPKEIVFANSMGKGYYLKGKIGKVPVRFLVDSGAQVSVVHPNLWEEVTDGDLDTLQPFE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 NVVKVANGAEMKILGVWDTAVSLGKLKLKAQFLVANASAEEAIIGTDVLQDHNAILDFEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_690 NVVKVANGAEMKILGVWDTAVSLGKLKLKAQFLVANASAEEAIIGTDVLQDHNAILDFEH
              250       260       270       280       290       300

              310       320       330       340   
pF1KE6 RTCTLKGKKFRLLPVGGSLEDEFDLELIEEDPSSEEGRQELSH
       :::::::::::::::::::::::::::::::::::::::::::
NP_690 RTCTLKGKKFRLLPVGGSLEDEFDLELIEEDPSSEEGRQELSH
              310       320       330       340   




343 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:53:06 2016 done: Tue Nov  8 12:53:07 2016
 Total Scan time:  5.300 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]