Result of FASTA (omim) for
pFN21AE6388
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6388, 377 aa
1>>>pF1KE6388 377 - 377 aa - 377 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.5635+/-0.000338; mu= 21.0512+/- 0.021
mean_var=61.3459+/-12.428, 0's: 0 Z-trim(114.7): 23 B-trim: 0 in 0/54
Lambda= 0.163750
statistics sampled from 24622 (24638) to 24622 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.289), width: 16
Scan time: 7.280
The best scores are: opt bits E(85289)
NP_932069 (OMIM: 613366) solute carrier family 10 ( 377) 2533 606.8 2.7e-173
NP_000443 (OMIM: 601295,613291) ileal sodium/bile ( 348) 1114 271.5 2.1e-72
NP_003040 (OMIM: 182396) sodium/bile acid cotransp ( 349) 723 179.1 1.3e-44
NP_001135863 (OMIM: 312090) P3 protein isoform 2 p ( 448) 451 115.0 3.5e-25
XP_011529503 (OMIM: 312090) PREDICTED: P3 protein ( 477) 451 115.0 3.7e-25
NP_062822 (OMIM: 312090) P3 protein isoform 1 prec ( 477) 451 115.0 3.7e-25
NP_001135864 (OMIM: 312090) P3 protein isoform 1 p ( 477) 451 115.0 3.7e-25
XP_005277970 (OMIM: 312090) PREDICTED: P3 protein ( 532) 451 115.0 4e-25
XP_011529502 (OMIM: 312090) PREDICTED: P3 protein ( 532) 451 115.0 4e-25
XP_006724911 (OMIM: 312090) PREDICTED: P3 protein ( 541) 451 115.0 4e-25
XP_006724910 (OMIM: 312090) PREDICTED: P3 protein ( 570) 451 115.1 4.2e-25
>>NP_932069 (OMIM: 613366) solute carrier family 10 memb (377 aa)
initn: 2533 init1: 2533 opt: 2533 Z-score: 3232.3 bits: 606.8 E(85289): 2.7e-173
Smith-Waterman score: 2533; 99.7% identity (100.0% similar) in 377 aa overlap (1-377:1-377)
10 20 30 40 50 60
pF1KE6 MRANCSSSSACPANSSEEELPVGLEVHGNLELVFTVVSTVMMGLLMFSLGCSVEIRKLWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 MRANCSSSSACPANSSEEELPVGLEVHGNLELVFTVVSTVMMGLLMFSLGCSVEIRKLWS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 HIRRPWGIAVGLLCQFGLMPFTAYLLAISFSLKPVQAIAVLIMGCCPGGTISNVFTFWVD
:::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::
NP_932 HIRRPWGIAVGLLCQFGLMPFTAYLLAISFSLKPVQAIAVLIMGCCPGGTISNIFTFWVD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GDMDLSISMTTCSTVAALGMMPLCIYLYTWSWSLQQNLTIPYQNIGITLVCLTIPVAFGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 GDMDLSISMTTCSTVAALGMMPLCIYLYTWSWSLQQNLTIPYQNIGITLVCLTIPVAFGV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 YVNYRWPKQSKIILKIGAVVGGVLLLVVAVAGVVLAKGSWNSDITLLTISFIFPLIGHVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 YVNYRWPKQSKIILKIGAVVGGVLLLVVAVAGVVLAKGSWNSDITLLTISFIFPLIGHVT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 GFLLALFTHQSWQRCRTISLETGAQNIQMCITMLQLSFTAEHLVQMLSFPLAYGLFQLID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 GFLLALFTHQSWQRCRTISLETGAQNIQMCITMLQLSFTAEHLVQMLSFPLAYGLFQLID
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 GFLIVAAYQTYKRRLKNKHGKKNSGCTEVCHTRKSTSSRETNAFLEVNEEGAITPGPPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 GFLIVAAYQTYKRRLKNKHGKKNSGCTEVCHTRKSTSSRETNAFLEVNEEGAITPGPPGP
310 320 330 340 350 360
370
pF1KE6 MDCHRALEPVGHITSCE
:::::::::::::::::
NP_932 MDCHRALEPVGHITSCE
370
>>NP_000443 (OMIM: 601295,613291) ileal sodium/bile acid (348 aa)
initn: 1175 init1: 1069 opt: 1114 Z-score: 1421.0 bits: 271.5 E(85289): 2.1e-72
Smith-Waterman score: 1117; 47.5% identity (81.0% similar) in 326 aa overlap (30-355:30-345)
10 20 30 40 50 60
pF1KE6 MRANCSSSSACPANSSEEELPVGLEVHGNLELVFTVVSTVMMGLLMFSLGCSVEIRKLWS
: .:...: :....:.:::.::.:::.:. .
NP_000 MNDPNSCVDNATVCSGASCVVPESNFNNILSVVLSTVLTILLALVMFSMGCNVEIKKFLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 HIRRPWGIAVGLLCQFGLMPFTAYLLAISFSLKPVQAIAVLIMGCCPGGTISNVFTFWVD
::.::::: ::.:::::.::.:...:...:.. :.::..:::.::::::: ::....:::
NP_000 HIKRPWGICVGFLCQFGIMPLTGFILSVAFDILPLQAVVVLIIGCCPGGTASNILAYWVD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GDMDLSISMTTCSTVAALGMMPLCIYLYTWSWSLQQNLTIPYQNIGITLVCLTIPVAFGV
::::::.:::::::. ::::::::. .:: : . ...:::.::: .:: :..::..:.
NP_000 GDMDLSVSMTTCSTLLALGMMPLCLLIYTKMWVDSGSIVIPYDNIGTSLVALVVPVSIGM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 YVNYRWPKQSKIILKIGAVVGGVLLLVVAVAGVVLAKGSWNSDITLLTISFIFPLIGHVT
.::..::...:::::::...:..:....::.: .: ...: : :. :::. :.
NP_000 FVNHKWPQKAKIILKIGSIAGAILIVLIAVVGGILYQSAWIIAPKLWIIGTIFPVAGYSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 GFLLALFTHQSWQRCRTISLETGAQNIQMCITMLQLSFTAEHLVQMLSFPLAYGLFQLID
::::: .. : ::::...::: :: :.: :..::::: :.: ...::: :..:::
NP_000 GFLLARIAGLPWYRCRTVAFETGMQNTQLCSTIVQLSFTPEELNVVFTFPLIYSIFQLAF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 GFLIVAAYQTYKRRLKNKHGKKNSGCTEVCHTRKSTSSRETNAFLEVNEEGAITPGPPGP
. .... : .::. :::... :. ..... . :.. : ..: :.. :
NP_000 AAIFLGFYVAYKK----CHGKNKA---EIPESKENGTEPESS-FYKAN--GGFQPDEK
310 320 330 340
370
pF1KE6 MDCHRALEPVGHITSCE
>>NP_003040 (OMIM: 182396) sodium/bile acid cotransporte (349 aa)
initn: 696 init1: 403 opt: 723 Z-score: 921.8 bits: 179.1 E(85289): 1.3e-44
Smith-Waterman score: 723; 39.4% identity (73.3% similar) in 292 aa overlap (31-313:24-309)
10 20 30 40 50 60
pF1KE6 MRANCSSSSACPANSSEEELPVGLEVHGNLELVFTVVSTVMMGLLMFSLGCSVEIRKLWS
.:...:. . :. ..:.::::..:. :. .
NP_003 MEAHNASAPFNFTLPPNFGKRPTDLALSVILVFMLFFIMLSLGCTMEFSKIKA
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 HIRRPWGIAVGLLCQFGLMPFTAYLLAISFSLKPVQAIAVLIMGCCPGGTISNVFTFWVD
:. .: :.:..:. :.:.::.::..:. : :: ..:.:.:. :: :::..::::.. .
NP_003 HLWKPKGLAIALVAQYGIMPLTAFVLGKVFRLKNIEALAILVCGCSPGGNLSNVFSLAMK
60 70 80 90 100 110
130 140 150 160 170
pF1KE6 GDMDLSISMTTCSTVAALGMMPLCIYLYTWS-WSLQQNLTIPYQNIGITLVCLTIPVAFG
:::.::: :::::: ::::::: .:.:. . .. . . .::..: :.:: . :: ..:
NP_003 GDMNLSIVMTTCSTFCALGMMPLLLYIYSRGIYDGDLKDKVPYKGIVISLVLVLIPCTIG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE6 VYVNYRWPKQSKIILKIGAVVGGVLLLVVAVAGVVLAKGSWNSDIT------LLTISFIF
. .. . :. . ..: : .. .:: ::: .::. . ...: :.. : ..
NP_003 IVLKSKRPQYMRYVIKGGMII--ILLCSVAV--TVLSAINVGKSIMFAMTPLLIATSSLM
180 190 200 210 220
240 250 260 270 280 290
pF1KE6 PLIGHVTGFLL-ALFTHQSWQRCR-TISLETGAQNIQMCITMLQLSFTAEHLVQMLSFPL
:.:: . :..: ::: .. ::: :.:.::: ::.:.: :.:...: : . .. :::
NP_003 PFIGFLLGYVLSALFCLNG--RCRRTVSMETGCQNVQLCSTILNVAFPPEVIGPLFFFPL
230 240 250 260 270 280
300 310 320 330 340 350
pF1KE6 AYGLFQLIDGFLIVAAYQTYKRRLKNKHGKKNSGCTEVCHTRKSTSSRETNAFLEVNEEG
: .::: .:.:..: . :..
NP_003 LYMIFQLGEGLLLIAIFWCYEKFKTPKDKTKMIYTAATTEETIPGALGNGTYKGEDCSPC
290 300 310 320 330 340
>>NP_001135863 (OMIM: 312090) P3 protein isoform 2 precu (448 aa)
initn: 453 init1: 356 opt: 451 Z-score: 573.1 bits: 115.0 E(85289): 3.5e-25
Smith-Waterman score: 451; 31.7% identity (63.5% similar) in 271 aa overlap (12-278:143-408)
10 20 30 40
pF1KE6 MRANCSSSSACPANSSEEELPVGLEVHGNLELVFTVVSTVM
::... : . : .. ... .. ..
NP_001 EVLTIKNLVDAHEAPPTLIEERRDFCIKVSPAEDTPATLSADLAHFSENPILYLLLPLIF
120 130 140 150 160 170
50 60 70 80 90 100
pF1KE6 MGLLMFSLGCSVEIRKLWSHIRRPWGIAVGLLCQFGLMPFTAYLLAISFSLKPVQAIAVL
.. :.::.::.. : . .. : . .::: :: .::. :.:.: : : . :....
NP_001 VN--KCSFGCKVELEVLKGLMQSPQPMLLGLLGQFLVMPLYAFLMAKVFMLPKALALGLI
180 190 200 210 220 230
110 120 130 140 150 160
pF1KE6 IMGCCPGGTISNVFTFWVDGDMDLSISMTTCSTVAALGMMPLCIYLYTWSWSLQQNLTIP
: ::: : .:.. . ::. :.:::: ::::: :..:: .:. :....: .:
NP_001 ITCSSPGGGGSYLFSLLLGGDVTLAISMTFLSTVAATGFLPLSSAIYSRLLSIHETLHVP
240 250 260 270 280 290
170 180 190 200 210
pF1KE6 YQNIGITLVCLTIPVAFGVYVNYRWPKQSKIILKIGAVVGGVLLL----VVAVAGVVLAK
..: ::. ..::.: :: .. . :: :...:.. . :::: .. :: .
NP_001 ISKILGTLLFIAIPIAVGVLIKSKLPKFSQLLLQVVKPFSFVLLLGGLFLAYRMGVFILA
300 310 320 330 340 350
220 230 240 250 260 270
pF1KE6 GSWNSDITLLTISFIFPLIGHVTGFLLALFTHQSWQRCRTISLETGAQNIQMCITMLQLS
: . .. ... ::.: ..:. :: . . ::.:.:.:.:: . ..:::::
NP_001 GI---RLPIVLVGITVPLVGLLVGYCLATCLKLPVAQRRTVSIEVGVQNSLLALAMLQLS
360 370 380 390 400
280 290 300 310 320 330
pF1KE6 FTAEHLVQMLSFPLAYGLFQLIDGFLIVAAYQTYKRRLKNKHGKKNSGCTEVCHTRKSTS
.
NP_001 LRRLQADYASQAPFIVALSGTSEMLALVIGHFIYSSLFPVP
410 420 430 440
>>XP_011529503 (OMIM: 312090) PREDICTED: P3 protein isof (477 aa)
initn: 453 init1: 356 opt: 451 Z-score: 572.7 bits: 115.0 E(85289): 3.7e-25
Smith-Waterman score: 451; 31.7% identity (63.5% similar) in 271 aa overlap (12-278:172-437)
10 20 30 40
pF1KE6 MRANCSSSSACPANSSEEELPVGLEVHGNLELVFTVVSTVM
::... : . : .. ... .. ..
XP_011 LAPLHIQLVDAHEAPPTLIEERRDFCIKVSPAEDTPATLSADLAHFSENPILYLLLPLIF
150 160 170 180 190 200
50 60 70 80 90 100
pF1KE6 MGLLMFSLGCSVEIRKLWSHIRRPWGIAVGLLCQFGLMPFTAYLLAISFSLKPVQAIAVL
.. :.::.::.. : . .. : . .::: :: .::. :.:.: : : . :....
XP_011 VN--KCSFGCKVELEVLKGLMQSPQPMLLGLLGQFLVMPLYAFLMAKVFMLPKALALGLI
210 220 230 240 250
110 120 130 140 150 160
pF1KE6 IMGCCPGGTISNVFTFWVDGDMDLSISMTTCSTVAALGMMPLCIYLYTWSWSLQQNLTIP
: ::: : .:.. . ::. :.:::: ::::: :..:: .:. :....: .:
XP_011 ITCSSPGGGGSYLFSLLLGGDVTLAISMTFLSTVAATGFLPLSSAIYSRLLSIHETLHVP
260 270 280 290 300 310
170 180 190 200 210
pF1KE6 YQNIGITLVCLTIPVAFGVYVNYRWPKQSKIILKIGAVVGGVLLL----VVAVAGVVLAK
..: ::. ..::.: :: .. . :: :...:.. . :::: .. :: .
XP_011 ISKILGTLLFIAIPIAVGVLIKSKLPKFSQLLLQVVKPFSFVLLLGGLFLAYRMGVFILA
320 330 340 350 360 370
220 230 240 250 260 270
pF1KE6 GSWNSDITLLTISFIFPLIGHVTGFLLALFTHQSWQRCRTISLETGAQNIQMCITMLQLS
: . .. ... ::.: ..:. :: . . ::.:.:.:.:: . ..:::::
XP_011 GI---RLPIVLVGITVPLVGLLVGYCLATCLKLPVAQRRTVSIEVGVQNSLLALAMLQLS
380 390 400 410 420 430
280 290 300 310 320 330
pF1KE6 FTAEHLVQMLSFPLAYGLFQLIDGFLIVAAYQTYKRRLKNKHGKKNSGCTEVCHTRKSTS
.
XP_011 LRRLQADYASQAPFIVALSGTSEMLALVIGHFIYSSLFPVP
440 450 460 470
>>NP_062822 (OMIM: 312090) P3 protein isoform 1 precurso (477 aa)
initn: 453 init1: 356 opt: 451 Z-score: 572.7 bits: 115.0 E(85289): 3.7e-25
Smith-Waterman score: 451; 31.7% identity (63.5% similar) in 271 aa overlap (12-278:172-437)
10 20 30 40
pF1KE6 MRANCSSSSACPANSSEEELPVGLEVHGNLELVFTVVSTVM
::... : . : .. ... .. ..
NP_062 LAPLHIQLVDAHEAPPTLIEERRDFCIKVSPAEDTPATLSADLAHFSENPILYLLLPLIF
150 160 170 180 190 200
50 60 70 80 90 100
pF1KE6 MGLLMFSLGCSVEIRKLWSHIRRPWGIAVGLLCQFGLMPFTAYLLAISFSLKPVQAIAVL
.. :.::.::.. : . .. : . .::: :: .::. :.:.: : : . :....
NP_062 VN--KCSFGCKVELEVLKGLMQSPQPMLLGLLGQFLVMPLYAFLMAKVFMLPKALALGLI
210 220 230 240 250
110 120 130 140 150 160
pF1KE6 IMGCCPGGTISNVFTFWVDGDMDLSISMTTCSTVAALGMMPLCIYLYTWSWSLQQNLTIP
: ::: : .:.. . ::. :.:::: ::::: :..:: .:. :....: .:
NP_062 ITCSSPGGGGSYLFSLLLGGDVTLAISMTFLSTVAATGFLPLSSAIYSRLLSIHETLHVP
260 270 280 290 300 310
170 180 190 200 210
pF1KE6 YQNIGITLVCLTIPVAFGVYVNYRWPKQSKIILKIGAVVGGVLLL----VVAVAGVVLAK
..: ::. ..::.: :: .. . :: :...:.. . :::: .. :: .
NP_062 ISKILGTLLFIAIPIAVGVLIKSKLPKFSQLLLQVVKPFSFVLLLGGLFLAYRMGVFILA
320 330 340 350 360 370
220 230 240 250 260 270
pF1KE6 GSWNSDITLLTISFIFPLIGHVTGFLLALFTHQSWQRCRTISLETGAQNIQMCITMLQLS
: . .. ... ::.: ..:. :: . . ::.:.:.:.:: . ..:::::
NP_062 GI---RLPIVLVGITVPLVGLLVGYCLATCLKLPVAQRRTVSIEVGVQNSLLALAMLQLS
380 390 400 410 420 430
280 290 300 310 320 330
pF1KE6 FTAEHLVQMLSFPLAYGLFQLIDGFLIVAAYQTYKRRLKNKHGKKNSGCTEVCHTRKSTS
.
NP_062 LRRLQADYASQAPFIVALSGTSEMLALVIGHFIYSSLFPVP
440 450 460 470
>>NP_001135864 (OMIM: 312090) P3 protein isoform 1 precu (477 aa)
initn: 453 init1: 356 opt: 451 Z-score: 572.7 bits: 115.0 E(85289): 3.7e-25
Smith-Waterman score: 451; 31.7% identity (63.5% similar) in 271 aa overlap (12-278:172-437)
10 20 30 40
pF1KE6 MRANCSSSSACPANSSEEELPVGLEVHGNLELVFTVVSTVM
::... : . : .. ... .. ..
NP_001 LAPLHIQLVDAHEAPPTLIEERRDFCIKVSPAEDTPATLSADLAHFSENPILYLLLPLIF
150 160 170 180 190 200
50 60 70 80 90 100
pF1KE6 MGLLMFSLGCSVEIRKLWSHIRRPWGIAVGLLCQFGLMPFTAYLLAISFSLKPVQAIAVL
.. :.::.::.. : . .. : . .::: :: .::. :.:.: : : . :....
NP_001 VN--KCSFGCKVELEVLKGLMQSPQPMLLGLLGQFLVMPLYAFLMAKVFMLPKALALGLI
210 220 230 240 250
110 120 130 140 150 160
pF1KE6 IMGCCPGGTISNVFTFWVDGDMDLSISMTTCSTVAALGMMPLCIYLYTWSWSLQQNLTIP
: ::: : .:.. . ::. :.:::: ::::: :..:: .:. :....: .:
NP_001 ITCSSPGGGGSYLFSLLLGGDVTLAISMTFLSTVAATGFLPLSSAIYSRLLSIHETLHVP
260 270 280 290 300 310
170 180 190 200 210
pF1KE6 YQNIGITLVCLTIPVAFGVYVNYRWPKQSKIILKIGAVVGGVLLL----VVAVAGVVLAK
..: ::. ..::.: :: .. . :: :...:.. . :::: .. :: .
NP_001 ISKILGTLLFIAIPIAVGVLIKSKLPKFSQLLLQVVKPFSFVLLLGGLFLAYRMGVFILA
320 330 340 350 360 370
220 230 240 250 260 270
pF1KE6 GSWNSDITLLTISFIFPLIGHVTGFLLALFTHQSWQRCRTISLETGAQNIQMCITMLQLS
: . .. ... ::.: ..:. :: . . ::.:.:.:.:: . ..:::::
NP_001 GI---RLPIVLVGITVPLVGLLVGYCLATCLKLPVAQRRTVSIEVGVQNSLLALAMLQLS
380 390 400 410 420 430
280 290 300 310 320 330
pF1KE6 FTAEHLVQMLSFPLAYGLFQLIDGFLIVAAYQTYKRRLKNKHGKKNSGCTEVCHTRKSTS
.
NP_001 LRRLQADYASQAPFIVALSGTSEMLALVIGHFIYSSLFPVP
440 450 460 470
>>XP_005277970 (OMIM: 312090) PREDICTED: P3 protein isof (532 aa)
initn: 453 init1: 356 opt: 451 Z-score: 572.1 bits: 115.0 E(85289): 4e-25
Smith-Waterman score: 451; 31.7% identity (63.5% similar) in 271 aa overlap (12-278:227-492)
10 20 30 40
pF1KE6 MRANCSSSSACPANSSEEELPVGLEVHGNLELVFTVVSTVM
::... : . : .. ... .. ..
XP_005 LAPLHIQLVDAHEAPPTLIEERRDFCIKVSPAEDTPATLSADLAHFSENPILYLLLPLIF
200 210 220 230 240 250
50 60 70 80 90 100
pF1KE6 MGLLMFSLGCSVEIRKLWSHIRRPWGIAVGLLCQFGLMPFTAYLLAISFSLKPVQAIAVL
.. :.::.::.. : . .. : . .::: :: .::. :.:.: : : . :....
XP_005 VN--KCSFGCKVELEVLKGLMQSPQPMLLGLLGQFLVMPLYAFLMAKVFMLPKALALGLI
260 270 280 290 300 310
110 120 130 140 150 160
pF1KE6 IMGCCPGGTISNVFTFWVDGDMDLSISMTTCSTVAALGMMPLCIYLYTWSWSLQQNLTIP
: ::: : .:.. . ::. :.:::: ::::: :..:: .:. :....: .:
XP_005 ITCSSPGGGGSYLFSLLLGGDVTLAISMTFLSTVAATGFLPLSSAIYSRLLSIHETLHVP
320 330 340 350 360 370
170 180 190 200 210
pF1KE6 YQNIGITLVCLTIPVAFGVYVNYRWPKQSKIILKIGAVVGGVLLL----VVAVAGVVLAK
..: ::. ..::.: :: .. . :: :...:.. . :::: .. :: .
XP_005 ISKILGTLLFIAIPIAVGVLIKSKLPKFSQLLLQVVKPFSFVLLLGGLFLAYRMGVFILA
380 390 400 410 420 430
220 230 240 250 260 270
pF1KE6 GSWNSDITLLTISFIFPLIGHVTGFLLALFTHQSWQRCRTISLETGAQNIQMCITMLQLS
: . .. ... ::.: ..:. :: . . ::.:.:.:.:: . ..:::::
XP_005 GI---RLPIVLVGITVPLVGLLVGYCLATCLKLPVAQRRTVSIEVGVQNSLLALAMLQLS
440 450 460 470 480 490
280 290 300 310 320 330
pF1KE6 FTAEHLVQMLSFPLAYGLFQLIDGFLIVAAYQTYKRRLKNKHGKKNSGCTEVCHTRKSTS
.
XP_005 LRRLQADYASQAPFIVALSGTSEMLALVIGHFIYSSLFPVP
500 510 520 530
>>XP_011529502 (OMIM: 312090) PREDICTED: P3 protein isof (532 aa)
initn: 453 init1: 356 opt: 451 Z-score: 572.1 bits: 115.0 E(85289): 4e-25
Smith-Waterman score: 451; 31.7% identity (63.5% similar) in 271 aa overlap (12-278:227-492)
10 20 30 40
pF1KE6 MRANCSSSSACPANSSEEELPVGLEVHGNLELVFTVVSTVM
::... : . : .. ... .. ..
XP_011 LAPLHIQLVDAHEAPPTLIEERRDFCIKVSPAEDTPATLSADLAHFSENPILYLLLPLIF
200 210 220 230 240 250
50 60 70 80 90 100
pF1KE6 MGLLMFSLGCSVEIRKLWSHIRRPWGIAVGLLCQFGLMPFTAYLLAISFSLKPVQAIAVL
.. :.::.::.. : . .. : . .::: :: .::. :.:.: : : . :....
XP_011 VN--KCSFGCKVELEVLKGLMQSPQPMLLGLLGQFLVMPLYAFLMAKVFMLPKALALGLI
260 270 280 290 300 310
110 120 130 140 150 160
pF1KE6 IMGCCPGGTISNVFTFWVDGDMDLSISMTTCSTVAALGMMPLCIYLYTWSWSLQQNLTIP
: ::: : .:.. . ::. :.:::: ::::: :..:: .:. :....: .:
XP_011 ITCSSPGGGGSYLFSLLLGGDVTLAISMTFLSTVAATGFLPLSSAIYSRLLSIHETLHVP
320 330 340 350 360 370
170 180 190 200 210
pF1KE6 YQNIGITLVCLTIPVAFGVYVNYRWPKQSKIILKIGAVVGGVLLL----VVAVAGVVLAK
..: ::. ..::.: :: .. . :: :...:.. . :::: .. :: .
XP_011 ISKILGTLLFIAIPIAVGVLIKSKLPKFSQLLLQVVKPFSFVLLLGGLFLAYRMGVFILA
380 390 400 410 420 430
220 230 240 250 260 270
pF1KE6 GSWNSDITLLTISFIFPLIGHVTGFLLALFTHQSWQRCRTISLETGAQNIQMCITMLQLS
: . .. ... ::.: ..:. :: . . ::.:.:.:.:: . ..:::::
XP_011 GI---RLPIVLVGITVPLVGLLVGYCLATCLKLPVAQRRTVSIEVGVQNSLLALAMLQLS
440 450 460 470 480 490
280 290 300 310 320 330
pF1KE6 FTAEHLVQMLSFPLAYGLFQLIDGFLIVAAYQTYKRRLKNKHGKKNSGCTEVCHTRKSTS
.
XP_011 LRRLQADYASQAPFIVALSGTSEMLALVIGHFIYSSLFPVP
500 510 520 530
>>XP_006724911 (OMIM: 312090) PREDICTED: P3 protein isof (541 aa)
initn: 453 init1: 356 opt: 451 Z-score: 572.0 bits: 115.0 E(85289): 4e-25
Smith-Waterman score: 451; 31.7% identity (63.5% similar) in 271 aa overlap (12-278:236-501)
10 20 30 40
pF1KE6 MRANCSSSSACPANSSEEELPVGLEVHGNLELVFTVVSTVM
::... : . : .. ... .. ..
XP_006 EVLTIKNLVDAHEAPPTLIEERRDFCIKVSPAEDTPATLSADLAHFSENPILYLLLPLIF
210 220 230 240 250 260
50 60 70 80 90 100
pF1KE6 MGLLMFSLGCSVEIRKLWSHIRRPWGIAVGLLCQFGLMPFTAYLLAISFSLKPVQAIAVL
.. :.::.::.. : . .. : . .::: :: .::. :.:.: : : . :....
XP_006 VN--KCSFGCKVELEVLKGLMQSPQPMLLGLLGQFLVMPLYAFLMAKVFMLPKALALGLI
270 280 290 300 310 320
110 120 130 140 150 160
pF1KE6 IMGCCPGGTISNVFTFWVDGDMDLSISMTTCSTVAALGMMPLCIYLYTWSWSLQQNLTIP
: ::: : .:.. . ::. :.:::: ::::: :..:: .:. :....: .:
XP_006 ITCSSPGGGGSYLFSLLLGGDVTLAISMTFLSTVAATGFLPLSSAIYSRLLSIHETLHVP
330 340 350 360 370 380
170 180 190 200 210
pF1KE6 YQNIGITLVCLTIPVAFGVYVNYRWPKQSKIILKIGAVVGGVLLL----VVAVAGVVLAK
..: ::. ..::.: :: .. . :: :...:.. . :::: .. :: .
XP_006 ISKILGTLLFIAIPIAVGVLIKSKLPKFSQLLLQVVKPFSFVLLLGGLFLAYRMGVFILA
390 400 410 420 430 440
220 230 240 250 260 270
pF1KE6 GSWNSDITLLTISFIFPLIGHVTGFLLALFTHQSWQRCRTISLETGAQNIQMCITMLQLS
: . .. ... ::.: ..:. :: . . ::.:.:.:.:: . ..:::::
XP_006 GI---RLPIVLVGITVPLVGLLVGYCLATCLKLPVAQRRTVSIEVGVQNSLLALAMLQLS
450 460 470 480 490 500
280 290 300 310 320 330
pF1KE6 FTAEHLVQMLSFPLAYGLFQLIDGFLIVAAYQTYKRRLKNKHGKKNSGCTEVCHTRKSTS
.
XP_006 LRRLQADYASQAPFIVALSGTSEMLALVIGHFIYSSLFPVP
510 520 530 540
377 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 12:49:36 2016 done: Tue Nov 8 12:49:37 2016
Total Scan time: 7.280 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]