FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6379, 327 aa
  1>>>pF1KE6379 327 - 327 aa - 327 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9800+/-0.00106; mu= 17.2883+/- 0.064
 mean_var=57.0321+/-10.878, 0's: 0 Z-trim(102.1): 25  B-trim: 0 in 0/48
 Lambda= 0.169830
 statistics sampled from 6784 (6791) to 6784 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.579), E-opt: 0.2 (0.209), width:  16
 Scan time:  1.600

The best scores are:                                      opt bits E(32554)
CCDS7286.1 VPS26A gene_id:9559|Hs108|chr10         ( 327) 2141 533.1 1.2e-151
CCDS41536.1 VPS26A gene_id:9559|Hs108|chr10        ( 251) 1582 396.1 1.6e-110
CCDS8495.1 VPS26B gene_id:112936|Hs108|chr11       ( 336) 1540 385.8 2.6e-107


>>CCDS7286.1 VPS26A gene_id:9559|Hs108|chr10              (327 aa)
 initn: 2141 init1: 2141 opt: 2141  Z-score: 2836.2  bits: 533.1 E(32554): 1.2e-151
Smith-Waterman score: 2141; 100.0% identity (100.0% similar) in 327 aa overlap (1-327:1-327)

               10        20        30        40        50        60
pF1KE6 MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 KRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 KRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 YIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 YIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 NKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 NKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 VKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWRKAPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 VKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWRKAPE
              250       260       270       280       290       300

              310       320       
pF1KE6 KLRKQRTNFHQRFESPESQASAEQPEM
       :::::::::::::::::::::::::::
CCDS72 KLRKQRTNFHQRFESPESQASAEQPEM
              310       320       

>>CCDS41536.1 VPS26A gene_id:9559|Hs108|chr10             (251 aa)
 initn: 1582 init1: 1582 opt: 1582  Z-score: 2097.7  bits: 396.1 E(32554): 1.6e-110
Smith-Waterman score: 1582; 99.2% identity (100.0% similar) in 245 aa overlap (1-245:1-245)

               10        20        30        40        50        60
pF1KE6 MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 KRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 YIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 YIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 NKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 VKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWRKAPE
       :::..                                                       
CCDS41 VKGDNFMEKSS                                                 
              250                                                  

>>CCDS8495.1 VPS26B gene_id:112936|Hs108|chr11            (336 aa)
 initn: 1527 init1: 1504 opt: 1540  Z-score: 2040.2  bits: 385.8 E(32554): 2.6e-107
Smith-Waterman score: 1540; 69.8% identity (89.3% similar) in 328 aa overlap (1-325:1-326)

               10        20        30        40        50        60
pF1KE6 MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPG
       :::.:  ::   :..:.:::.:.:: :: :::::: ::..::::::.:::::.::.:.:.
CCDS84 MSFFG--FGQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLALKNPN
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KE6 KRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYES
       ::::::::.:::.:::::. :..: ::::.:::.:: :::.:::...:::: .:::::::
CCDS84 KRLEHQGIKIEFIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYES
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KE6 YIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEY
       : : ::.:::::..:: :::.:.:::.:..:: :.:::..:.::::::::::::::::::
CCDS84 YTGQNVKLRYFLRATISRRLNDVVKEMDIVVHTLSTYPELNSSIKMEVGIEDCLHIEFEY
      120       130       140       150       160       170        

              190       200       210       220       230       240
pF1KE6 NKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAP
       ::::::::::::::::::::::::.:::...::.: :: ::..  :..::::::::::::
CCDS84 NKSKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTGPNVYHENDTIAKYEIMDGAP
      180       190       200       210       220       230        

              250       260       270       280       290          
pF1KE6 VKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWRKAP-
       :.:::::::::::::. ::::::.::::::::.:::::.:::.::::::::..::::.  
CCDS84 VRGESIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEVVLWRKGDI
      240       250       260       270       280       290        

       300       310       320               
pF1KE6 --EKLRKQRTNFHQRFESPESQASAEQPEM        
         ... .: .   ::::.  : . .. :          
CCDS84 VRKSMSHQAAIASQRFEGTTSLGEVRTPSQLSDNNCRQ
      300       310       320       330      




327 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:44:16 2016 done: Tue Nov  8 12:44:16 2016
 Total Scan time:  1.600 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]