FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6368, 361 aa
  1>>>pF1KE6368 361 - 361 aa - 361 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0999+/-0.000323; mu= 17.8941+/- 0.020
 mean_var=69.0610+/-14.209, 0's: 0 Z-trim(115.8): 15  B-trim: 0 in 0/50
 Lambda= 0.154333
 statistics sampled from 26570 (26579) to 26570 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.312), width:  16
 Scan time:  5.930

The best scores are:                                      opt bits E(85289)
NP_036545 (OMIM: 607065) glutaminyl-peptide cyclot ( 361) 2456 555.7 5.9e-158


>>NP_036545 (OMIM: 607065) glutaminyl-peptide cyclotrans  (361 aa)
 initn: 2456 init1: 2456 opt: 2456  Z-score: 2956.8  bits: 555.7 E(85289): 5.9e-158
Smith-Waterman score: 2456; 100.0% identity (100.0% similar) in 361 aa overlap (1-361:1-361)

               10        20        30        40        50        60
pF1KE6 MAGGRHRRVVGTLHLLLLVAALPWASRGVSPSASAWPEEKNYHQPAILNSSALRQIAEGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MAGGRHRRVVGTLHLLLLVAALPWASRGVSPSASAWPEEKNYHQPAILNSSALRQIAEGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SISEMWQNDLQPLLIERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFLSQTPYGYRSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 SISEMWQNDLQPLLIERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFLSQTPYGYRSF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 SNIISTLNPTAKRHLVLACHYDSKYFSHWNNRVFVGATDSAVPCAMMLELARALDKKLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 SNIISTLNPTAKRHLVLACHYDSKYFSHWNNRVFVGATDSAVPCAMMLELARALDKKLLS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 LKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSLYGSRHLAAKMASTPHPPGARGTSQLHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSLYGSRHLAAKMASTPHPPGARGTSQLHG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 MDLLVLLDLIGAPNPTFPNFFPNSARWFERLQAIEHELHELGLLKDHSLEGRYFQNYSYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MDLLVLLDLIGAPNPTFPNFFPNSARWFERLQAIEHELHELGLLKDHSLEGRYFQNYSYG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 GVIQDDHIPFLRRGVPVLHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVFVLEYLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 GVIQDDHIPFLRRGVPVLHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVFVLEYLH
              310       320       330       340       350       360

        
pF1KE6 L
       :
NP_036 L
        




361 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:32:04 2016 done: Tue Nov  8 12:32:04 2016
 Total Scan time:  5.930 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]