FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6367, 360 aa
  1>>>pF1KE6367 360 - 360 aa - 360 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8617+/-0.000841; mu= 13.3334+/- 0.051
 mean_var=68.4462+/-13.416, 0's: 0 Z-trim(106.5): 16  B-trim: 2 in 1/50
 Lambda= 0.155024
 statistics sampled from 9018 (9023) to 9018 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.277), width:  16
 Scan time:  1.800

The best scores are:                                      opt bits E(32554)
CCDS11674.1 AMZ2 gene_id:51321|Hs108|chr17         ( 360) 2464 560.0 1.1e-159
CCDS32714.1 AMZ2 gene_id:51321|Hs108|chr17         ( 302) 1452 333.7 1.3e-91
CCDS34589.1 AMZ1 gene_id:155185|Hs108|chr7         ( 498)  727 171.6 1.3e-42
CCDS64582.1 AMZ1 gene_id:155185|Hs108|chr7         ( 297)  422 103.3 2.7e-22


>>CCDS11674.1 AMZ2 gene_id:51321|Hs108|chr17              (360 aa)
 initn: 2464 init1: 2464 opt: 2464  Z-score: 2980.5  bits: 560.0 E(32554): 1.1e-159
Smith-Waterman score: 2464; 99.7% identity (100.0% similar) in 360 aa overlap (1-360:1-360)

               10        20        30        40        50        60
pF1KE6 MQIIRHSEQTLKTALISKNPVLVSQYEKLDAGEQRLMNEAFQPASDLFGPITLHSPSDWI
       :::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
CCDS11 MQIIRHSEQTLKTALISKNPVLVSQYEKLNAGEQRLMNEAFQPASDLFGPITLHSPSDWI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 TSHPEAPQDFEQFFSDPYRKTPSPNKRSIYIQSIGSLGNTRIISEEYIKWLTGYCKAYFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TSHPEAPQDFEQFFSDPYRKTPSPNKRSIYIQSIGSLGNTRIISEEYIKWLTGYCKAYFY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 GLRVKLLEPVPVSVTRCSFRVNENTHNLQIHAGDILKFLKKKKPEDAFCVVGITMIDLYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GLRVKLLEPVPVSVTRCSFRVNENTHNLQIHAGDILKFLKKKKPEDAFCVVGITMIDLYP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 RDSWNFVFGQASLTDGVGIFSFARYGSDFYSMHYKGKVKKLKKTSSSDYSIFDNYYIPEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RDSWNFVFGQASLTDGVGIFSFARYGSDFYSMHYKGKVKKLKKTSSSDYSIFDNYYIPEI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 TSVLLLRSCKTLTHEIGHIFGLRHCQWLACLMQGSNHLEEADRRPLNLCPICLHKLQCAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TSVLLLRSCKTLTHEIGHIFGLRHCQWLACLMQGSNHLEEADRRPLNLCPICLHKLQCAV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 GFSIVERYKALVRWIDDESSDTPGATPEHSHEDNGNLPKPVEAFKEWKEWIIKCLAVLQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GFSIVERYKALVRWIDDESSDTPGATPEHSHEDNGNLPKPVEAFKEWKEWIIKCLAVLQK
              310       320       330       340       350       360

>>CCDS32714.1 AMZ2 gene_id:51321|Hs108|chr17              (302 aa)
 initn: 1449 init1: 1449 opt: 1452  Z-score: 1758.5  bits: 333.7 E(32554): 1.3e-91
Smith-Waterman score: 1947; 83.6% identity (83.9% similar) in 360 aa overlap (1-360:1-302)

               10        20        30        40        50        60
pF1KE6 MQIIRHSEQTLKTALISKNPVLVSQYEKLDAGEQRLMNEAFQPASDLFGPITLHSPSDWI
       :::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
CCDS32 MQIIRHSEQTLKTALISKNPVLVSQYEKLNAGEQRLMNEAFQPASDLFGPITLHSPSDWI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 TSHPEAPQDFEQFFSDPYRKTPSPNKRSIYIQSIGSLGNTRIISEEYIKWLTGYCKAYFY
       :::::::::::::::::::::::::::::::::::                         
CCDS32 TSHPEAPQDFEQFFSDPYRKTPSPNKRSIYIQSIG-------------------------
               70        80        90                              

              130       140       150       160       170       180
pF1KE6 GLRVKLLEPVPVSVTRCSFRVNENTHNLQIHAGDILKFLKKKKPEDAFCVVGITMIDLYP
                                        :::::::::::::::::::::::::::
CCDS32 ---------------------------------DILKFLKKKKPEDAFCVVGITMIDLYP
                                          100       110       120  

              190       200       210       220       230       240
pF1KE6 RDSWNFVFGQASLTDGVGIFSFARYGSDFYSMHYKGKVKKLKKTSSSDYSIFDNYYIPEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RDSWNFVFGQASLTDGVGIFSFARYGSDFYSMHYKGKVKKLKKTSSSDYSIFDNYYIPEI
            130       140       150       160       170       180  

              250       260       270       280       290       300
pF1KE6 TSVLLLRSCKTLTHEIGHIFGLRHCQWLACLMQGSNHLEEADRRPLNLCPICLHKLQCAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TSVLLLRSCKTLTHEIGHIFGLRHCQWLACLMQGSNHLEEADRRPLNLCPICLHKLQCAV
            190       200       210       220       230       240  

              310       320       330       340       350       360
pF1KE6 GFSIVERYKALVRWIDDESSDTPGATPEHSHEDNGNLPKPVEAFKEWKEWIIKCLAVLQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GFSIVERYKALVRWIDDESSDTPGATPEHSHEDNGNLPKPVEAFKEWKEWIIKCLAVLQK
            250       260       270       280       290       300  

>>CCDS34589.1 AMZ1 gene_id:155185|Hs108|chr7              (498 aa)
 initn: 610 init1: 300 opt: 727  Z-score: 878.6  bits: 171.6 E(32554): 1.3e-42
Smith-Waterman score: 727; 36.2% identity (68.0% similar) in 309 aa overlap (9-314:15-321)

                     10        20         30        40        50   
pF1KE6       MQIIRHSEQTLKTALISKNPVLVSQY-EKLDAGEQRLMNEAFQPASDLFGPITL
                     ..:: ::.: . .: . :   .. .:. .. ::..:   ::  . .
CCDS34 MLQCRPAQEFSFGPRALKDALVSTDAALQQLYVSAFSPAERLFLAEAYNPQRTLFCTLLI
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KE6 HSPSDWITSHPEAPQDFEQFFSDPYRKTPSPNKRSIYIQSIGSLGNTRIISEEYIKWLTG
       ..  ::. :.::::.::. : ..  .. :   .. ::.: :    . . ..   .. : .
CCDS34 RTGFDWLLSRPEAPEDFQTFHASLQHRKPRLARKHIYLQPIDL--SEEPVGSSLLHQLCS
               70        80        90       100         110        

           120       130       140       150       160       170   
pF1KE6 YCKAYFYGLRVKLLEPVPVSVTRCSFRVNENTHNLQIHAGDILKFLKKKKPEDAFCVVGI
         .:.: ::::: :  : ..  ::: : ....  ::.:.  ::.:::..:: ::.::.:.
CCDS34 CTEAFFLGLRVKCLPSVAAASIRCSSRPSRDSDRLQLHTDGILSFLKNNKPGDALCVLGL
      120       130       140       150       160       170        

           180       190       200       210       220         230 
pF1KE6 TMIDLYPRDSWNFVFGQASLTDGVGIFSFARYGSDFYSMHYKGKVKKLKKTSSS--DYSI
       :. ::::...:.:.:..      ::. ::::....: .   ..    : .....  .  .
CCDS34 TLSDLYPHEAWSFTFSKFLPGHEVGVCSFARFSGEFPKSGPSAPDLALVEAAADGPEAPL
      180       190       200       210       220       230        

             240       250       260       270       280       290 
pF1KE6 FDNYYIPEITSVLLLRSCKTLTHEIGHIFGLRHCQWLACLMQGSNHLEEADRRPLNLCPI
        :  .   .... ... ::.  ::. :..:: .:.:: :::::.  :.:: ::::.::::
CCDS34 QDRGWALCFSALGMVQCCKVTCHELCHLLGLGNCRWLRCLMQGALSLDEALRRPLDLCPI
      240       250       260       270       280       290        

             300       310       320       330       340       350 
pF1KE6 CLHKLQCAVGFSIVERYKALVRWIDDESSDTPGATPEHSHEDNGNLPKPVEAFKEWKEWI
       ::.::: ..:: ..:::. :  :                                     
CCDS34 CLRKLQHVLGFRLIERYQRLYTWTQAVVGTWPSQEAGEPSVWEDTPPASADSGMCCESDS
      300       310       320       330       340       350        

>>CCDS64582.1 AMZ1 gene_id:155185|Hs108|chr7              (297 aa)
 initn: 439 init1: 260 opt: 422  Z-score: 513.6  bits: 103.3 E(32554): 2.7e-22
Smith-Waterman score: 422; 35.5% identity (68.3% similar) in 183 aa overlap (9-190:15-195)

                     10        20         30        40        50   
pF1KE6       MQIIRHSEQTLKTALISKNPVLVSQY-EKLDAGEQRLMNEAFQPASDLFGPITL
                     ..:: ::.: . .: . :   .. .:. .. ::..:   ::  . .
CCDS64 MLQCRPAQEFSFGPRALKDALVSTDAALQQLYVSAFSPAERLFLAEAYNPQRTLFCTLLI
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KE6 HSPSDWITSHPEAPQDFEQFFSDPYRKTPSPNKRSIYIQSIGSLGNTRIISEEYIKWLTG
       ..  ::. :.::::.::. : ..  .. :   .. ::.: :    . . ..   .. : .
CCDS64 RTGFDWLLSRPEAPEDFQTFHASLQHRKPRLARKHIYLQPIDL--SEEPVGSSLLHQLCS
               70        80        90       100         110        

           120       130       140       150       160       170   
pF1KE6 YCKAYFYGLRVKLLEPVPVSVTRCSFRVNENTHNLQIHAGDILKFLKKKKPEDAFCVVGI
         .:.: ::::: :  : ..  ::: : ....  ::.:.  ::.:::..:: ::.::.:.
CCDS64 CTEAFFLGLRVKCLPSVAAASIRCSSRPSRDSDRLQLHTDGILSFLKNNKPGDALCVLGL
      120       130       140       150       160       170        

           180       190       200       210       220       230   
pF1KE6 TMIDLYPRDSWNFVFGQASLTDGVGIFSFARYGSDFYSMHYKGKVKKLKKTSSSDYSIFD
       :. ::::...:.:.:..                                           
CCDS64 TLSDLYPHEAWSFTFSKFLPGHGHVPRALPPSGPGELPLAPLPHAGCAQPGRGPAAAPGP
      180       190       200       210       220       230        




360 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:31:27 2016 done: Tue Nov  8 12:31:28 2016
 Total Scan time:  1.800 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]