FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6363, 424 aa
  1>>>pF1KE6363 424 - 424 aa - 424 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2949+/-0.00103; mu= 16.7876+/- 0.062
 mean_var=56.8326+/-11.558, 0's: 0 Z-trim(102.0): 33  B-trim: 401 in 1/47
 Lambda= 0.170128
 statistics sampled from 6745 (6766) to 6745 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.564), E-opt: 0.2 (0.208), width:  16
 Scan time:  2.340

The best scores are:                                      opt bits E(32554)
CCDS2967.1 SLC35A5 gene_id:55032|Hs108|chr3        ( 424) 2796 694.8  4e-200
CCDS5010.1 SLC35A1 gene_id:10559|Hs108|chr6        ( 337)  252 70.4   3e-12


>>CCDS2967.1 SLC35A5 gene_id:55032|Hs108|chr3             (424 aa)
 initn: 2796 init1: 2796 opt: 2796  Z-score: 3706.3  bits: 694.8 E(32554): 4e-200
Smith-Waterman score: 2796; 100.0% identity (100.0% similar) in 424 aa overlap (1-424:1-424)

               10        20        30        40        50        60
pF1KE6 MEKQCCSHPVICSLSTMYTFLLGAIFIALSSSRILLVKYSANEENKYDYLPTTVNVCSEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MEKQCCSHPVICSLSTMYTFLLGAIFIALSSSRILLVKYSANEENKYDYLPTTVNVCSEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VKLVFCVLVSFCVIKKDHQSRNLKYASWKEFSDFMKWSIPAFLYFLDNLIVFYVLSYLQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 VKLVFCVLVSFCVIKKDHQSRNLKYASWKEFSDFMKWSIPAFLYFLDNLIVFYVLSYLQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 AMAVIFSNFSIITTALLFRIVLKRRLNWIQWASLLTLFLSIVALTAGTKTLQHNLAGRGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 AMAVIFSNFSIITTALLFRIVLKRRLNWIQWASLLTLFLSIVALTAGTKTLQHNLAGRGF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 HHDAFFSPSNSCLLFRSECPRKDNCTAKEWTFPEAKWNTTARVFSHIRLGMGHVLIIVQC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 HHDAFFSPSNSCLLFRSECPRKDNCTAKEWTFPEAKWNTTARVFSHIRLGMGHVLIIVQC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 FISSMANIYNEKILKEGNQLTESIFIQNSKLYFFGILFNGLTLGLQRSNRDQIKNCGFFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 FISSMANIYNEKILKEGNQLTESIFIQNSKLYFFGILFNGLTLGLQRSNRDQIKNCGFFY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 GHSAFSVALIFVTAFQGLSVAFILKFLDNMFHVLMAQVTTVIITTVSVLVFDFRPSLEFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 GHSAFSVALIFVTAFQGLSVAFILKFLDNMFHVLMAQVTTVIITTVSVLVFDFRPSLEFF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 LEAPSVLLSIFIYNASKPQVPEYAPRQERIRDLSGNLWERSSGDGEELERLTKPKSDESD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 LEAPSVLLSIFIYNASKPQVPEYAPRQERIRDLSGNLWERSSGDGEELERLTKPKSDESD
              370       380       390       400       410       420

           
pF1KE6 EDTF
       ::::
CCDS29 EDTF
           

>>CCDS5010.1 SLC35A1 gene_id:10559|Hs108|chr6             (337 aa)
 initn: 259 init1: 161 opt: 252  Z-score: 333.4  bits: 70.4 E(32554): 3e-12
Smith-Waterman score: 318; 25.8% identity (56.0% similar) in 368 aa overlap (13-373:7-313)

               10        20        30        40        50          
pF1KE6 MEKQCCSHPVICSLSTMYTFLLGAIFIALSSSRILLVKYSANEENKYDYLPTTVNVC-SE
                   ... .. .   :..  ...   . ..:. . . :  :. ::. :: .:
CCDS50       MAAPRDNVTLLFKLYCLAVMTLMAAVYTIALRYTRTSD-KELYFSTTA-VCITE
                     10        20        30         40         50  

      60        70        80        90            100       110    
pF1KE6 LVKLVFCVLVSFCVIKKDHQSRNLKYASWKEF-----SDFMKWSIPAFLYFLDNLIVFYV
       ..::    :.:  .. :.  : .   :: .:      ....: :.:...: ..: ..: .
CCDS50 VIKL----LLSVGILAKETGSLGRFKASLRENVLGSPKELLKLSVPSLVYAVQNNMAFLA
                 60        70        80        90       100        

          120       130       140       150       160       170    
pF1KE6 LSYLQPAMAVIFSNFSIITTALLFRIVLKRRLNWIQWASLLTLFLSIVALTAGTKTLQHN
       :: :. :.  .  ...:  :::   ..:.: :. .::       .:.  : ::.  .:  
CCDS50 LSNLDAAVYQVTYQLKIPCTALCTVLMLNRTLSKLQW-------VSVFMLCAGVTLVQ--
      110       120       130       140              150           

          180       190       200       210       220       230    
pF1KE6 LAGRGFHHDAFFSPSNSCLLFRSECPRKDNCTAKEWTFPEAKWNTTARVFSHIRLGMGHV
                                          :   .:   : . : ..  ::.: .
CCDS50 -----------------------------------WKPAQA---TKVVVEQNPLLGFGAI
                                        160          170       180 

          240       250       260       270       280        290   
pF1KE6 LIIVQCFISSMANIYNEKILKEGNQLTESIFIQNSKLYFFGILFNGLTL-GLQRSNRDQI
        : : :  :..:..: ::.:: ..    :....: ..:. ::.   .:: :.  :.  .:
CCDS50 AIAVLC--SGFAGVYFEKVLKSSDT---SLWVRNIQMYLSGII---VTLAGVYLSDGAEI
               190       200          210          220       230   

           300       310       320       330       340       350   
pF1KE6 KNCGFFYGHSAFSVALIFVTAFQGLSVAFILKFLDNMFHVLMAQVTTVIITTVSVLVFDF
       :. :::::.. .   .::...  :: .. ..:. ::... . : .. :. : .::..: .
CCDS50 KEKGFFYGYTYYVWFVIFLASVGGLYTSVVVKYTDNIMKGFSAAAAIVLSTIASVMLFGL
           240       250       260       270       280       290   

           360       370       380       390       400       410   
pF1KE6 RPSLEFFLEAPSVLLSIFIYNASKPQVPEYAPRQERIRDLSGNLWERSSGDGEELERLTK
       . .: : : .  : .::..:                                        
CCDS50 QITLTFALGTLLVCVSIYLYGLPRQDTTSIQQGETASKERVIGV                
           300       310       320       330                       




424 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:29:03 2016 done: Tue Nov  8 12:29:03 2016
 Total Scan time:  2.340 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]