FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6358, 326 aa
  1>>>pF1KE6358 326 - 326 aa - 326 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6137+/-0.000346; mu= 14.5562+/- 0.021
 mean_var=70.5114+/-14.209, 0's: 0 Z-trim(114.9): 21  B-trim: 44 in 1/48
 Lambda= 0.152737
 statistics sampled from 24945 (24964) to 24945 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.293), width:  16
 Scan time:  5.340

The best scores are:                                      opt bits E(85289)
NP_001629 (OMIM: 107760) apolipoprotein F precurso ( 326) 2141 480.7 1.8e-135


>>NP_001629 (OMIM: 107760) apolipoprotein F precursor [H  (326 aa)
 initn: 2141 init1: 2141 opt: 2141  Z-score: 2553.2  bits: 480.7 E(85289): 1.8e-135
Smith-Waterman score: 2141; 100.0% identity (100.0% similar) in 326 aa overlap (1-326:1-326)

               10        20        30        40        50        60
pF1KE6 MTGLCGYSAPDMRGLRLIMIPVELLLCYLLLHPVDATSYGKQTNVLMHFPLSLESQTPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTGLCGYSAPDMRGLRLIMIPVELLLCYLLLHPVDATSYGKQTNVLMHFPLSLESQTPSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 DPLSCQFLHPKSLPGFSHMAPLPKFLVSLALRNALEEAGCQADVWALQLQLYRQGGVNAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPLSCQFLHPKSLPGFSHMAPLPKFLVSLALRNALEEAGCQADVWALQLQLYRQGGVNAT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 QVLIQHLRGLQKGRSTERNVSVEALASALQLLAREQQSTGRVGRSLPTEDCENEKEQAVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QVLIQHLRGLQKGRSTERNVSVEALASALQLLAREQQSTGRVGRSLPTEDCENEKEQAVH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 NVVQLLPGVGTFYNLGTALYYATQNCLGKARERGRDGAIDLGYDLLMTMAGMSGGPMGLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NVVQLLPGVGTFYNLGTALYYATQNCLGKARERGRDGAIDLGYDLLMTMAGMSGGPMGLA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 ISAALKPALRSGVQQLIQYYQDQKDANISQPETTKEGLRAISDVSDLEETTTLASFISEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISAALKPALRSGVQQLIQYYQDQKDANISQPETTKEGLRAISDVSDLEETTTLASFISEV
              250       260       270       280       290       300

              310       320      
pF1KE6 VSSAPYWGWAIIKSYDLDPGAGSLEI
       ::::::::::::::::::::::::::
NP_001 VSSAPYWGWAIIKSYDLDPGAGSLEI
              310       320      




326 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:26:09 2016 done: Tue Nov  8 12:26:10 2016
 Total Scan time:  5.340 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]