FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6352, 370 aa
  1>>>pF1KE6352 370 - 370 aa - 370 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3415+/-0.000425; mu= 15.2881+/- 0.026
 mean_var=53.5397+/-10.877, 0's: 0 Z-trim(110.7): 13  B-trim: 226 in 1/48
 Lambda= 0.175282
 statistics sampled from 19117 (19122) to 19117 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.593), E-opt: 0.2 (0.224), width:  16
 Scan time:  6.310

The best scores are:                                      opt bits E(85289)
NP_478059 (OMIM: 610936,610992,616038) phosphoseri ( 370) 2442 625.7 5.1e-179
NP_066977 (OMIM: 610936,610992,616038) phosphoseri ( 324) 1924 494.7 1.2e-139


>>NP_478059 (OMIM: 610936,610992,616038) phosphoserine a  (370 aa)
 initn: 2442 init1: 2442 opt: 2442  Z-score: 3335.0  bits: 625.7 E(85289): 5.1e-179
Smith-Waterman score: 2442; 100.0% identity (100.0% similar) in 370 aa overlap (1-370:1-370)

               10        20        30        40        50        60
pF1KE6 MDAPRQVVNFGPGPAKLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_478 MDAPRQVVNFGPGPAKLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 RELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_478 RELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_478 INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_478 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_478 NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 MNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_478 MNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAF
              310       320       330       340       350       360

              370
pF1KE6 MKKFLEMHQL
       ::::::::::
NP_478 MKKFLEMHQL
              370

>>NP_066977 (OMIM: 610936,610992,616038) phosphoserine a  (324 aa)
 initn: 2116 init1: 1920 opt: 1924  Z-score: 2628.0  bits: 494.7 E(85289): 1.2e-139
Smith-Waterman score: 2028; 87.6% identity (87.6% similar) in 370 aa overlap (1-370:1-324)

               10        20        30        40        50        60
pF1KE6 MDAPRQVVNFGPGPAKLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MDAPRQVVNFGPGPAKLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 RELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 RELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::          
NP_066 NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYV----------
              250       260       270       280       290          

              310       320       330       340       350       360
pF1KE6 MNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAF
                                           ::::::::::::::::::::::::
NP_066 ------------------------------------SVGGIRASLYNAVTIEDVQKLAAF
                                                  300       310    

              370
pF1KE6 MKKFLEMHQL
       ::::::::::
NP_066 MKKFLEMHQL
          320    




370 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:23:19 2016 done: Tue Nov  8 12:23:20 2016
 Total Scan time:  6.310 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]