FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6351, 377 aa
  1>>>pF1KE6351 377 - 377 aa - 377 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3938+/-0.000857; mu= 16.3546+/- 0.051
 mean_var=64.2791+/-12.764, 0's: 0 Z-trim(106.4): 18  B-trim: 11 in 1/50
 Lambda= 0.159970
 statistics sampled from 8941 (8953) to 8941 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.635), E-opt: 0.2 (0.275), width:  16
 Scan time:  1.970

The best scores are:                                      opt bits E(32554)
CCDS13182.1 HM13 gene_id:81502|Hs108|chr20         ( 377) 2453 574.8 4.4e-164
CCDS13183.1 HM13 gene_id:81502|Hs108|chr20         ( 394) 2285 536.0 2.1e-152
CCDS42861.1 HM13 gene_id:81502|Hs108|chr20         ( 426) 2285 536.0 2.3e-152


>>CCDS13182.1 HM13 gene_id:81502|Hs108|chr20              (377 aa)
 initn: 2453 init1: 2453 opt: 2453  Z-score: 3059.3  bits: 574.8 E(32554): 4.4e-164
Smith-Waterman score: 2453; 99.7% identity (99.7% similar) in 377 aa overlap (1-377:1-377)

               10        20        30        40        50        60
pF1KE6 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKFFEAPI
       :::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
CCDS13 HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYEESNPKDPAAVTES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYEESNPKDPAAVTES
              310       320       330       340       350       360

              370       
pF1KE6 KEGTEASASKGLEKKEK
       :::::::::::::::::
CCDS13 KEGTEASASKGLEKKEK
              370       

>>CCDS13183.1 HM13 gene_id:81502|Hs108|chr20              (394 aa)
 initn: 2274 init1: 2274 opt: 2285  Z-score: 2849.5  bits: 536.0 E(32554): 2.1e-152
Smith-Waterman score: 2285; 93.1% identity (95.5% similar) in 379 aa overlap (1-375:1-379)

               10        20        30        40        50        60
pF1KE6 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKFFEAPI
       :::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
CCDS13 HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF
              250       260       270       280       290       300

              310       320       330       340       350          
pF1KE6 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYEESN---PKDPAAV
       ::::::::::::::::::::::::::::::::::::::::::::::: :    :. :  .
CCDS13 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYESSAEILPHTPRLT
              310       320       330       340       350       360

        360       370                    
pF1KE6 T-ESKEGTEASASKGLEKKEK             
          .  :. :: . ....:               
CCDS13 HFPTVSGSPASLADSMQQKLAGPRRRRPQNPSAM
              370       380       390    

>>CCDS42861.1 HM13 gene_id:81502|Hs108|chr20              (426 aa)
 initn: 2274 init1: 2274 opt: 2285  Z-score: 2849.0  bits: 536.0 E(32554): 2.3e-152
Smith-Waterman score: 2285; 93.1% identity (95.5% similar) in 379 aa overlap (1-375:1-379)

               10        20        30        40        50        60
pF1KE6 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKFFEAPI
       :::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
CCDS42 HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF
              250       260       270       280       290       300

              310       320       330       340       350          
pF1KE6 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYEESN---PKDPAAV
       ::::::::::::::::::::::::::::::::::::::::::::::: :    :. :  .
CCDS42 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYESSAEILPHTPRLT
              310       320       330       340       350       360

        360       370                                              
pF1KE6 T-ESKEGTEASASKGLEKKEK                                       
          .  :. :: . ....:                                         
CCDS42 HFPTVSGSPASLADSMQQKLAGPRRRRPQNPSAIYEESNPKDPAAVTESKEGTEASASKG
              370       380       390       400       410       420




377 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:22:44 2016 done: Tue Nov  8 12:22:44 2016
 Total Scan time:  1.970 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]