FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6343, 311 aa
  1>>>pF1KE6343 311 - 311 aa - 311 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.3437+/-0.000393; mu= 20.7205+/- 0.024
 mean_var=63.0673+/-12.858, 0's: 0 Z-trim(112.4): 12  B-trim: 0 in 0/53
 Lambda= 0.161500
 statistics sampled from 21305 (21311) to 21305 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.619), E-opt: 0.2 (0.25), width:  16
 Scan time:  5.200

The best scores are:                                      opt bits E(85289)
NP_060352 (OMIM: 204300,601780,606725) ceroid-lipo ( 311) 2123 503.4 2.4e-142


>>NP_060352 (OMIM: 204300,601780,606725) ceroid-lipofusc  (311 aa)
 initn: 2123 init1: 2123 opt: 2123  Z-score: 2676.6  bits: 503.4 E(85289): 2.4e-142
Smith-Waterman score: 2123; 100.0% identity (100.0% similar) in 311 aa overlap (1-311:1-311)

               10        20        30        40        50        60
pF1KE6 MEATRRRQHLGATGGPGAQLGASFLQARHGSVSADEAARTAPFHLDLWFYFTLQNWVLDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MEATRRRQHLGATGGPGAQLGASFLQARHGSVSADEAARTAPFHLDLWFYFTLQNWVLDF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GRPIAMLVFPLEWFPLNKPSVGDYFHMAYNVITPFLLLKLIERSPRTLPRSITYVSIIIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 GRPIAMLVFPLEWFPLNKPSVGDYFHMAYNVITPFLLLKLIERSPRTLPRSITYVSIIIF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 IMGASIHLVGDSVNHRLLFSGYQHHLSVRENPIIKNLKPETLIDSFELLYYYDEYLGHCM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 IMGASIHLVGDSVNHRLLFSGYQHHLSVRENPIIKNLKPETLIDSFELLYYYDEYLGHCM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 WYIPFFLILFMYFSGCFTASKAESLIPGPALLLVAPSGLYYWYLVTEGQIFILFIFTFFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 WYIPFFLILFMYFSGCFTASKAESLIPGPALLLVAPSGLYYWYLVTEGQIFILFIFTFFA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 MLALVLHQKRKRLFLDSNGLFLFSSFALTLLLVALWVAWLWNDPVLRKKYPGVIYVPEPW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MLALVLHQKRKRLFLDSNGLFLFSSFALTLLLVALWVAWLWNDPVLRKKYPGVIYVPEPW
              250       260       270       280       290       300

              310 
pF1KE6 AFYTLHVSSRH
       :::::::::::
NP_060 AFYTLHVSSRH
              310 




311 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:17:49 2016 done: Tue Nov  8 12:17:49 2016
 Total Scan time:  5.200 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]