FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6343, 311 aa
  1>>>pF1KE6343 311 - 311 aa - 311 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4380+/-0.00085; mu= 20.2271+/- 0.051
 mean_var=62.0435+/-13.153, 0's: 0 Z-trim(106.5): 16  B-trim: 44 in 1/49
 Lambda= 0.162827
 statistics sampled from 8999 (9002) to 8999 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.277), width:  16
 Scan time:  1.760

The best scores are:                                      opt bits E(32554)
CCDS10227.1 CLN6 gene_id:54982|Hs108|chr15         ( 311) 2123 507.2 6.4e-144


>>CCDS10227.1 CLN6 gene_id:54982|Hs108|chr15              (311 aa)
 initn: 2123 init1: 2123 opt: 2123  Z-score: 2697.3  bits: 507.2 E(32554): 6.4e-144
Smith-Waterman score: 2123; 100.0% identity (100.0% similar) in 311 aa overlap (1-311:1-311)

               10        20        30        40        50        60
pF1KE6 MEATRRRQHLGATGGPGAQLGASFLQARHGSVSADEAARTAPFHLDLWFYFTLQNWVLDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MEATRRRQHLGATGGPGAQLGASFLQARHGSVSADEAARTAPFHLDLWFYFTLQNWVLDF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GRPIAMLVFPLEWFPLNKPSVGDYFHMAYNVITPFLLLKLIERSPRTLPRSITYVSIIIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GRPIAMLVFPLEWFPLNKPSVGDYFHMAYNVITPFLLLKLIERSPRTLPRSITYVSIIIF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 IMGASIHLVGDSVNHRLLFSGYQHHLSVRENPIIKNLKPETLIDSFELLYYYDEYLGHCM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IMGASIHLVGDSVNHRLLFSGYQHHLSVRENPIIKNLKPETLIDSFELLYYYDEYLGHCM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 WYIPFFLILFMYFSGCFTASKAESLIPGPALLLVAPSGLYYWYLVTEGQIFILFIFTFFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 WYIPFFLILFMYFSGCFTASKAESLIPGPALLLVAPSGLYYWYLVTEGQIFILFIFTFFA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 MLALVLHQKRKRLFLDSNGLFLFSSFALTLLLVALWVAWLWNDPVLRKKYPGVIYVPEPW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLALVLHQKRKRLFLDSNGLFLFSSFALTLLLVALWVAWLWNDPVLRKKYPGVIYVPEPW
              250       260       270       280       290       300

              310 
pF1KE6 AFYTLHVSSRH
       :::::::::::
CCDS10 AFYTLHVSSRH
              310 




311 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:17:48 2016 done: Tue Nov  8 12:17:48 2016
 Total Scan time:  1.760 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]