FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6342, 384 aa
  1>>>pF1KE6342 384 - 384 aa - 384 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4864+/-0.000859; mu= 10.8177+/- 0.052
 mean_var=77.0497+/-15.110, 0's: 0 Z-trim(107.3): 14  B-trim: 0 in 0/51
 Lambda= 0.146113
 statistics sampled from 9513 (9520) to 9513 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.292), width:  16
 Scan time:  2.270

The best scores are:                                      opt bits E(32554)
CCDS12344.1 CALR3 gene_id:125972|Hs108|chr19       ( 384) 2655 569.0 2.4e-162
CCDS12288.1 CALR gene_id:811|Hs108|chr19           ( 417)  951 209.8 3.6e-54


>>CCDS12344.1 CALR3 gene_id:125972|Hs108|chr19            (384 aa)
 initn: 2655 init1: 2655 opt: 2655  Z-score: 3028.0  bits: 569.0 E(32554): 2.4e-162
Smith-Waterman score: 2655; 99.7% identity (100.0% similar) in 384 aa overlap (1-384:1-384)

               10        20        30        40        50        60
pF1KE6 MARALVQFWAICMLRVALATVYFQEEFLDGEHWRNRWLQSTNDSRFGHFRLSSGKFYGHK
       :::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MARALVQLWAICMLRVALATVYFQEEFLDGEHWRNRWLQSTNDSRFGHFRLSSGKFYGHK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 EKDKGLQTTQNGRFYAISARFKPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVFPADIDQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EKDKGLQTTQNGRFYAISARFKPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVFPADIDQK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 NLNGKSQYYIMFGPDICGFDIKKVHVILHFKNKYHENKKLIRCKVDGFTHLYTLILRPDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NLNGKSQYYIMFGPDICGFDIKKVHVILHFKNKYHENKKLIRCKVDGFTHLYTLILRPDL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 SYDVKIDGQSIESGSIEYDWNLTSLKKETSPAESKDWEQTKDNKAQDWEKHFLDASTSKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SYDVKIDGQSIESGSIEYDWNLTSLKKETSPAESKDWEQTKDNKAQDWEKHFLDASTSKQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 SDWNGDLDGDWPAPMLQKPPYQDGLKPEGIHKDVWLHRKMKNTDYLTQYDLSEFENIGAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SDWNGDLDGDWPAPMLQKPPYQDGLKPEGIHKDVWLHRKMKNTDYLTQYDLSEFENIGAI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 GLELWQVRSGTIFDNFLITDDEEYADNFGKATWGETKGPEREMDAIQAKEEMKKAREEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GLELWQVRSGTIFDNFLITDDEEYADNFGKATWGETKGPEREMDAIQAKEEMKKAREEEE
              310       320       330       340       350       360

              370       380    
pF1KE6 EELLSGKINRHEHYFNQFHRRNEL
       ::::::::::::::::::::::::
CCDS12 EELLSGKINRHEHYFNQFHRRNEL
              370       380    

>>CCDS12288.1 CALR gene_id:811|Hs108|chr19                (417 aa)
 initn: 1193 init1: 878 opt: 951  Z-score: 1086.1  bits: 209.8 E(32554): 3.6e-54
Smith-Waterman score: 1312; 52.4% identity (76.8% similar) in 370 aa overlap (14-362:14-383)

               10        20        30        40        50        60
pF1KE6 MARALVQFWAICMLRVALATVYFQEEFLDGEHWRNRWLQSTNDSRFGHFRLSSGKFYGHK
                    : ::  .:::.:.::::. : .::..: . : ::.: :::::::: .
CCDS12 MLLSVPLLLGLLGLAVAEPAVYFKEQFLDGDGWTSRWIESKHKSDFGKFVLSSGKFYGDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 EKDKGLQTTQNGRFYAISARFKPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVFPADIDQK
       ::::::::.:..::::.:: :.::::::.:::.:.::::::..::::::.:.:: ..:: 
CCDS12 EKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPNSLDQT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 NLNGKSQYYIMFGPDICGFDIKKVHVILHFKNKYHENKKLIRCKVDGFTHLYTLILRPDL
       ...: :.: :::::::::   ::::::...:.:    .: :::: : ::::::::.::: 
CCDS12 DMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDN
              130       140       150       160       170       180

              190       200       210          220            230  
pF1KE6 SYDVKIDGQSIESGSIEYDWNLTSLKKETSPAESK--DW-EQTK-----DNKAQDWEK--
       .:.::::....::::.: ::..   ::  .:  ::  :: :..:     :.: .::.:  
CCDS12 TYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDASKPEDWDERAKIDDPTDSKPEDWDKPE
              190       200       210       220       230       240

              240       250       260       270           280      
pF1KE6 HFLDASTSKQSDWNGDLDGDWPAPMLQKPPYQDGLKPEGI----HKDVWLHRKMKNTDYL
       :. : ...:  ::. ..::.:  :..:.: :.   ::. :    .: .:.: .. : .: 
CCDS12 HIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEYS
              250       260       270       280       290       300

        290       300       310       320       330       340      
pF1KE6 TQYDLSEFENIGAIGLELWQVRSGTIFDNFLITDDEEYADNFGKATWGETKGPEREM---
        . ..  ..:.:..::.::::.:::::::::::.:: ::..::. ::: ::. :..:   
CCDS12 PDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMKDK
              310       320       330       340       350       360

               350       360       370       380                
pF1KE6 ----DAIQAKEEMKKAREEEEEELLSGKINRHEHYFNQFHRRNEL            
           . .. .:: :: .:::: :                                  
CCDS12 QDEEQRLKEEEEDKKRKEEEEAEDKEDDEDKDEDEEDEEDKEEDEEEDVPGQAKDEL
              370       380       390       400       410       




384 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:17:19 2016 done: Tue Nov  8 12:17:20 2016
 Total Scan time:  2.270 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]