FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6338, 313 aa
  1>>>pF1KE6338 313 - 313 aa - 313 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6709+/-0.000897; mu= 13.3460+/- 0.054
 mean_var=68.6803+/-13.383, 0's: 0 Z-trim(105.9): 16  B-trim: 0 in 0/50
 Lambda= 0.154760
 statistics sampled from 8694 (8699) to 8694 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.267), width:  16
 Scan time:  2.320

The best scores are:                                      opt bits E(32554)
CCDS11028.1 ASPA gene_id:443|Hs108|chr17           ( 313) 2146 488.2 3.5e-138
CCDS8175.1 ACY3 gene_id:91703|Hs108|chr11          ( 319)  981 228.1 7.1e-60


>>CCDS11028.1 ASPA gene_id:443|Hs108|chr17                (313 aa)
 initn: 2146 init1: 2146 opt: 2146  Z-score: 2594.4  bits: 488.2 E(32554): 3.5e-138
Smith-Waterman score: 2146; 100.0% identity (100.0% similar) in 313 aa overlap (1-313:1-313)

               10        20        30        40        50        60
pF1KE6 MTSCHIAEEHIQKVAIFGGTHGNELTGVFLVKHWLENGAEIQRTGLEVKPFITNPRAVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MTSCHIAEEHIQKVAIFGGTHGNELTGVFLVKHWLENGAEIQRTGLEVKPFITNPRAVKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 CTRYIDCDLNRIFDLENLGKKMSEDLPYEVRRAQEINHLFGPKDSEDSYDIIFDLHNTTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 CTRYIDCDLNRIFDLENLGKKMSEDLPYEVRRAQEINHLFGPKDSEDSYDIIFDLHNTTS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 NMGCTLILEDSRNNFLIQMFHYIKTSLAPLPCYVYLIEHPSLKYATTRSIAKYPVGIEVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NMGCTLILEDSRNNFLIQMFHYIKTSLAPLPCYVYLIEHPSLKYATTRSIAKYPVGIEVG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 PQPQGVLRADILDQMRKMIKHALDFIHHFNEGKEFPPCAIEVYKIIEKVDYPRDENGEIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PQPQGVLRADILDQMRKMIKHALDFIHHFNEGKEFPPCAIEVYKIIEKVDYPRDENGEIA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 AIIHPNLQDQDWKPLHPGDPMFLTLDGKTIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AIIHPNLQDQDWKPLHPGDPMFLTLDGKTIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTK
              250       260       270       280       290       300

              310   
pF1KE6 LTLNAKSIRCCLH
       :::::::::::::
CCDS11 LTLNAKSIRCCLH
              310   

>>CCDS8175.1 ACY3 gene_id:91703|Hs108|chr11               (319 aa)
 initn: 980 init1: 961 opt: 981  Z-score: 1188.5  bits: 228.1 E(32554): 7.1e-60
Smith-Waterman score: 981; 44.8% identity (76.0% similar) in 308 aa overlap (1-308:1-308)

               10        20        30        40        50        60
pF1KE6 MTSCHIAEEHIQKVAIFGGTHGNELTGVFLVKHWLENGAEIQRTGLEVKPFITNPRAVKK
       : :  . .: ...::. :::::::..::.:..:::.  ::.::... . : ..:: :.. 
CCDS81 MCSLPVPREPLRRVAVTGGTHGNEMSGVYLARHWLHAPAELQRASFSAVPVLANPAATSG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 CTRYIDCDLNRIFDLENLGKKMSEDLPYEVRRAQEINHLFGPKDSEDSYDIIFDLHNTTS
       : ::.: :::: :    :... . : :::: ::.:.:.:.::: : ...:...::::::.
CCDS81 CRRYVDHDLNRTFTSSFLNSRPTPDDPYEVTRARELNQLLGPKASGQAFDFVLDLHNTTA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 NMGCTLILEDSRNNFLIQMFHYIKTSLAPLPCYVYLIEHPSLKYATTRSIAKYPVGIEVG
       :::  :: ..:.. : ... .... .   : : :.: .. . .  .  :.::  .:.:.:
CCDS81 NMGTCLIAKSSHEVFAMHLCRHLQLQYPELSCQVFLYQRSGEESYNLDSVAKNGLGLELG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 PQPQGVLRADILDQMRKMIKHALDFIHHFNEGKEFPPCAIEVYKIIEKVDYPRDENGEIA
       :::::::::::...:: ..  .::::. ::.:  ::   .:.:. .  ::.:: : :..:
CCDS81 PQPQGVLRADIFSRMRTLVATVLDFIELFNQGTAFPAFEMEAYRPVGVVDFPRTEAGHLA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 AIIHPNLQDQDWKPLHPGDPMFLTLDGKTIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTK
       . .::.:::.:..::.:: :.:  ..:. .   :. ::::::.::::::::  ::..: :
CCDS81 GTVHPQLQDRDFQPLQPGAPIFQMFSGEDLLYEGESTVYPVFINEAAYYEKGVAFVQTEK
              250       260       270       280       290       300

              310         
pF1KE6 LTLNAKSIRCCLH      
       .:... ..           
CCDS81 FTFTVPAMPALTPAPSPAS
              310         




313 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:14:53 2016 done: Tue Nov  8 12:14:53 2016
 Total Scan time:  2.320 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]