Result of FASTA (omim) for
pFN21AE6335
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6335, 405 aa
1>>>pF1KE6335 405 - 405 aa - 405 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8676+/-0.000339; mu= 16.2804+/- 0.021
mean_var=101.2690+/-19.787, 0's: 0 Z-trim(117.6): 18 B-trim: 75 in 1/54
Lambda= 0.127449
statistics sampled from 29759 (29777) to 29759 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.349), width: 16
Scan time: 8.250
The best scores are: opt bits E(85289)
NP_057256 (OMIM: 608129) ubiquitin-associated doma ( 405) 2629 493.6 3.6e-139
XP_011543392 (OMIM: 616378) PREDICTED: UBX domain- ( 181) 189 44.7 0.00022
XP_016873363 (OMIM: 616378) PREDICTED: UBX domain- ( 297) 189 44.8 0.00033
NP_001273006 (OMIM: 616378) UBX domain-containing ( 297) 189 44.8 0.00033
NP_056937 (OMIM: 616378) UBX domain-containing pro ( 312) 189 44.9 0.00034
XP_005274090 (OMIM: 616378) PREDICTED: UBX domain- ( 312) 189 44.9 0.00034
>>NP_057256 (OMIM: 608129) ubiquitin-associated domain-c (405 aa)
initn: 2629 init1: 2629 opt: 2629 Z-score: 2619.5 bits: 493.6 E(85289): 3.6e-139
Smith-Waterman score: 2629; 100.0% identity (100.0% similar) in 405 aa overlap (1-405:1-405)
10 20 30 40 50 60
pF1KE6 MFVQEEKIFAGKVLRLHICASDGAEWLEEATEDTSVEKLKERCLKHCAHGSLEDPKSITH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MFVQEEKIFAGKVLRLHICASDGAEWLEEATEDTSVEKLKERCLKHCAHGSLEDPKSITH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 HKLIHAASERVLSDARTILEENIQDQDVLLLIKKRAPSPLPKMADVSAEEKKKQDQKAPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 HKLIHAASERVLSDARTILEENIQDQDVLLLIKKRAPSPLPKMADVSAEEKKKQDQKAPD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 KEAILRATANLPSYNMDRAAVQTNMRDFQTELRKILVSLIEVAQKLLALNPDAVELFKKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 KEAILRATANLPSYNMDRAAVQTNMRDFQTELRKILVSLIEVAQKLLALNPDAVELFKKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 NAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPTIDTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 NAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPTIDTP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 LPGQAPPEAEGATAAASEAAAGASATDEEARDELTEIFKKIRRKREFRADARAVISLMEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LPGQAPPEAEGATAAASEAAAGASATDEEARDELTEIFKKIRRKREFRADARAVISLMEM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 GFDEKEVIDALRVNNNQQNAACEWLLGDRKPSPEELDKGIDPDSPLFQAILDNPVVQLGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 GFDEKEVIDALRVNNNQQNAACEWLLGDRKPSPEELDKGIDPDSPLFQAILDNPVVQLGL
310 320 330 340 350 360
370 380 390 400
pF1KE6 TNPKTLLAFEDMLENPLNSTQWMNDPETGPVMLQISRIFQTLNRT
:::::::::::::::::::::::::::::::::::::::::::::
NP_057 TNPKTLLAFEDMLENPLNSTQWMNDPETGPVMLQISRIFQTLNRT
370 380 390 400
>>XP_011543392 (OMIM: 616378) PREDICTED: UBX domain-cont (181 aa)
initn: 187 init1: 99 opt: 189 Z-score: 199.5 bits: 44.7 E(85289): 0.00022
Smith-Waterman score: 225; 39.8% identity (64.6% similar) in 113 aa overlap (196-294:6-118)
170 180 190 200 210 220
pF1KE6 LLALNPDAVELFKKANAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLN-HMSVPQA
::..: :::::..:: ::: :. .... :
XP_011 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAA
10 20 30
230 240 250 260 270
pF1KE6 MEWLIEHAEDPTIDTPL--P-----GQAPPEAE--GATAAASEAAAGASATDEEARDELT
:.::.:: .:: .: :: : :. : .: : ...: :. : : .:: :.: :
XP_011 MDWLMEHEDDPDVDEPLETPLGHILGREPTSSEQGGLEGSGSAAGEGKPALSEEERQEQT
40 50 60 70 80 90
280 290 300 310 320 330
pF1KE6 ----EIFKKIRRKREFRADARAVISLMEMGFDEKEVIDALRVNNNQQNAACEWLLGDRKP
:. . .:.:: : . .:.
XP_011 KRMLELVAQKQREREEREEREALERERQRRRQGQELSAARQRLQEDEMRRAAEERRREKA
100 110 120 130 140 150
>>XP_016873363 (OMIM: 616378) PREDICTED: UBX domain-cont (297 aa)
initn: 193 init1: 99 opt: 189 Z-score: 196.6 bits: 44.8 E(85289): 0.00033
Smith-Waterman score: 225; 39.8% identity (64.6% similar) in 113 aa overlap (196-294:6-118)
170 180 190 200 210 220
pF1KE6 LLALNPDAVELFKKANAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLN-HMSVPQA
::..: :::::..:: ::: :. .... :
XP_016 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAA
10 20 30
230 240 250 260 270
pF1KE6 MEWLIEHAEDPTIDTPL--P-----GQAPPEAE--GATAAASEAAAGASATDEEARDELT
:.::.:: .:: .: :: : :. : .: : ...: :. : : .:: :.: :
XP_016 MDWLMEHEDDPDVDEPLETPLGHILGREPTSSEQGGLEGSGSAAGEGKPALSEEERQEQT
40 50 60 70 80 90
280 290 300 310 320 330
pF1KE6 ----EIFKKIRRKREFRADARAVISLMEMGFDEKEVIDALRVNNNQQNAACEWLLGDRKP
:. . .:.:: : . .:.
XP_016 KRMLELVAQKQREREEREEREALERERQRRRQGQELSAARQRLQEDEMRRAAEERRREKA
100 110 120 130 140 150
>>NP_001273006 (OMIM: 616378) UBX domain-containing prot (297 aa)
initn: 193 init1: 99 opt: 189 Z-score: 196.6 bits: 44.8 E(85289): 0.00033
Smith-Waterman score: 225; 39.8% identity (64.6% similar) in 113 aa overlap (196-294:6-118)
170 180 190 200 210 220
pF1KE6 LLALNPDAVELFKKANAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLN-HMSVPQA
::..: :::::..:: ::: :. .... :
NP_001 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAA
10 20 30
230 240 250 260 270
pF1KE6 MEWLIEHAEDPTIDTPL--P-----GQAPPEAE--GATAAASEAAAGASATDEEARDELT
:.::.:: .:: .: :: : :. : .: : ...: :. : : .:: :.: :
NP_001 MDWLMEHEDDPDVDEPLETPLGHILGREPTSSEQGGLEGSGSAAGEGKPALSEEERQEQT
40 50 60 70 80 90
280 290 300 310 320 330
pF1KE6 ----EIFKKIRRKREFRADARAVISLMEMGFDEKEVIDALRVNNNQQNAACEWLLGDRKP
:. . .:.:: : . .:.
NP_001 KRMLELVAQKQREREEREEREALERERQRRRQGQELSAARQRLQEDEMRRAAEERRREKA
100 110 120 130 140 150
>>NP_056937 (OMIM: 616378) UBX domain-containing protein (312 aa)
initn: 193 init1: 99 opt: 189 Z-score: 196.4 bits: 44.9 E(85289): 0.00034
Smith-Waterman score: 225; 39.8% identity (64.6% similar) in 113 aa overlap (196-294:6-118)
170 180 190 200 210 220
pF1KE6 LLALNPDAVELFKKANAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLN-HMSVPQA
::..: :::::..:: ::: :. .... :
NP_056 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAA
10 20 30
230 240 250 260 270
pF1KE6 MEWLIEHAEDPTIDTPL--P-----GQAPPEAE--GATAAASEAAAGASATDEEARDELT
:.::.:: .:: .: :: : :. : .: : ...: :. : : .:: :.: :
NP_056 MDWLMEHEDDPDVDEPLETPLGHILGREPTSSEQGGLEGSGSAAGEGKPALSEEERQEQT
40 50 60 70 80 90
280 290 300 310 320 330
pF1KE6 ----EIFKKIRRKREFRADARAVISLMEMGFDEKEVIDALRVNNNQQNAACEWLLGDRKP
:. . .:.:: : . .:.
NP_056 KRMLELVAQKQREREEREEREALERERQRRRQGQELSAARQRLQEDEMRRAAEERRREKA
100 110 120 130 140 150
>>XP_005274090 (OMIM: 616378) PREDICTED: UBX domain-cont (312 aa)
initn: 193 init1: 99 opt: 189 Z-score: 196.4 bits: 44.9 E(85289): 0.00034
Smith-Waterman score: 225; 39.8% identity (64.6% similar) in 113 aa overlap (196-294:6-118)
170 180 190 200 210 220
pF1KE6 LLALNPDAVELFKKANAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLN-HMSVPQA
::..: :::::..:: ::: :. .... :
XP_005 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAA
10 20 30
230 240 250 260 270
pF1KE6 MEWLIEHAEDPTIDTPL--P-----GQAPPEAE--GATAAASEAAAGASATDEEARDELT
:.::.:: .:: .: :: : :. : .: : ...: :. : : .:: :.: :
XP_005 MDWLMEHEDDPDVDEPLETPLGHILGREPTSSEQGGLEGSGSAAGEGKPALSEEERQEQT
40 50 60 70 80 90
280 290 300 310 320 330
pF1KE6 ----EIFKKIRRKREFRADARAVISLMEMGFDEKEVIDALRVNNNQQNAACEWLLGDRKP
:. . .:.:: : . .:.
XP_005 KRMLELVAQKQREREEREEREALERERQRRRQGQELSAARQRLQEDEMRRAAEERRREKA
100 110 120 130 140 150
405 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 12:13:13 2016 done: Tue Nov 8 12:13:14 2016
Total Scan time: 8.250 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]