FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6335, 405 aa
  1>>>pF1KE6335 405 - 405 aa - 405 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8466+/-0.000795; mu= 16.4771+/- 0.049
 mean_var=98.3013+/-19.249, 0's: 0 Z-trim(110.5): 20  B-trim: 0 in 0/52
 Lambda= 0.129358
 statistics sampled from 11625 (11637) to 11625 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.357), width:  16
 Scan time:  2.860

The best scores are:                                      opt bits E(32554)
CCDS35177.1 UBAC1 gene_id:10422|Hs108|chr9         ( 405) 2629 500.7  1e-141


>>CCDS35177.1 UBAC1 gene_id:10422|Hs108|chr9              (405 aa)
 initn: 2629 init1: 2629 opt: 2629  Z-score: 2657.6  bits: 500.7 E(32554): 1e-141
Smith-Waterman score: 2629; 100.0% identity (100.0% similar) in 405 aa overlap (1-405:1-405)

               10        20        30        40        50        60
pF1KE6 MFVQEEKIFAGKVLRLHICASDGAEWLEEATEDTSVEKLKERCLKHCAHGSLEDPKSITH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MFVQEEKIFAGKVLRLHICASDGAEWLEEATEDTSVEKLKERCLKHCAHGSLEDPKSITH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 HKLIHAASERVLSDARTILEENIQDQDVLLLIKKRAPSPLPKMADVSAEEKKKQDQKAPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 HKLIHAASERVLSDARTILEENIQDQDVLLLIKKRAPSPLPKMADVSAEEKKKQDQKAPD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 KEAILRATANLPSYNMDRAAVQTNMRDFQTELRKILVSLIEVAQKLLALNPDAVELFKKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KEAILRATANLPSYNMDRAAVQTNMRDFQTELRKILVSLIEVAQKLLALNPDAVELFKKA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 NAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPTIDTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 NAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPTIDTP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 LPGQAPPEAEGATAAASEAAAGASATDEEARDELTEIFKKIRRKREFRADARAVISLMEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LPGQAPPEAEGATAAASEAAAGASATDEEARDELTEIFKKIRRKREFRADARAVISLMEM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 GFDEKEVIDALRVNNNQQNAACEWLLGDRKPSPEELDKGIDPDSPLFQAILDNPVVQLGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GFDEKEVIDALRVNNNQQNAACEWLLGDRKPSPEELDKGIDPDSPLFQAILDNPVVQLGL
              310       320       330       340       350       360

              370       380       390       400     
pF1KE6 TNPKTLLAFEDMLENPLNSTQWMNDPETGPVMLQISRIFQTLNRT
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS35 TNPKTLLAFEDMLENPLNSTQWMNDPETGPVMLQISRIFQTLNRT
              370       380       390       400     




405 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:13:12 2016 done: Tue Nov  8 12:13:13 2016
 Total Scan time:  2.860 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]