FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6334, 316 aa
  1>>>pF1KE6334 316 - 316 aa - 316 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0040+/-0.000814; mu= 17.8550+/- 0.049
 mean_var=67.5706+/-13.354, 0's: 0 Z-trim(107.6): 22  B-trim: 0 in 0/51
 Lambda= 0.156025
 statistics sampled from 9690 (9708) to 9690 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.298), width:  16
 Scan time:  2.010

The best scores are:                                      opt bits E(32554)
CCDS43268.1 NUDT6 gene_id:11162|Hs108|chr4         ( 316) 2164 495.8 1.8e-140
CCDS3729.1 NUDT6 gene_id:11162|Hs108|chr4          ( 147) 1000 233.5 7.5e-62


>>CCDS43268.1 NUDT6 gene_id:11162|Hs108|chr4              (316 aa)
 initn: 2164 init1: 2164 opt: 2164  Z-score: 2635.2  bits: 495.8 E(32554): 1.8e-140
Smith-Waterman score: 2164; 100.0% identity (100.0% similar) in 316 aa overlap (1-316:1-316)

               10        20        30        40        50        60
pF1KE6 MRQPLSWGRWRAMLARTYGPGPSAGYRWASGAQGYVRNPPVGACDLQGELDRFGGISVRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MRQPLSWGRWRAMLARTYGPGPSAGYRWASGAQGYVRNPPVGACDLQGELDRFGGISVRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 ARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFIAPAASLGFCFHHAES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFIAPAASLGFCFHHAES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 DSSTLTLWLREGPSRLPGYASHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DSSTLTLWLREGPSRLPGYASHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 EEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 EECLRCEWMDLNDLAKTENTTPITSRVARLLLYGYREGFDKIDLTVEELPAVYTGLFYKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EECLRCEWMDLNDLAKTENTTPITSRVARLLLYGYREGFDKIDLTVEELPAVYTGLFYKL
              250       260       270       280       290       300

              310      
pF1KE6 YHKELPENYKTMKGID
       ::::::::::::::::
CCDS43 YHKELPENYKTMKGID
              310      

>>CCDS3729.1 NUDT6 gene_id:11162|Hs108|chr4               (147 aa)
 initn: 1000 init1: 1000 opt: 1000  Z-score: 1223.9  bits: 233.5 E(32554): 7.5e-62
Smith-Waterman score: 1000; 100.0% identity (100.0% similar) in 147 aa overlap (170-316:1-147)

     140       150       160       170       180       190         
pF1KE6 ASHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIK
                                     ::::::::::::::::::::::::::::::
CCDS37                               MWKFPGGLSEPEEDIGDTAVREVFEETGIK
                                             10        20        30

     200       210       220       230       240       250         
pF1KE6 SEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKTEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 SEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKTEN
               40        50        60        70        80        90

     260       270       280       290       300       310      
pF1KE6 TTPITSRVARLLLYGYREGFDKIDLTVEELPAVYTGLFYKLYHKELPENYKTMKGID
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 TTPITSRVARLLLYGYREGFDKIDLTVEELPAVYTGLFYKLYHKELPENYKTMKGID
              100       110       120       130       140       




316 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:12:36 2016 done: Tue Nov  8 12:12:36 2016
 Total Scan time:  2.010 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]