Result of FASTA (omim) for
pFN21AE6330
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6330, 390 aa
1>>>pF1KE6330 390 - 390 aa - 390 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.9350+/-0.000353; mu= -3.5290+/- 0.022
mean_var=265.5147+/-56.115, 0's: 0 Z-trim(122.6): 44 B-trim: 1251 in 1/58
Lambda= 0.078710
statistics sampled from 40932 (40992) to 40932 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.481), width: 16
Scan time: 7.590
The best scores are: opt bits E(85289)
NP_620411 (OMIM: 614281) endothelial cell-selectiv ( 390) 2596 307.6 3.4e-83
XP_011541362 (OMIM: 614281) PREDICTED: endothelial ( 287) 1910 229.6 7.5e-60
XP_005271777 (OMIM: 614281) PREDICTED: endothelial ( 211) 1236 152.9 6.4e-37
NP_055127 (OMIM: 606011) V-set and immunoglobulin ( 327) 422 60.6 6.1e-09
NP_079045 (OMIM: 611693,615237) CXADR-like membran ( 373) 403 58.5 3e-08
NP_001015887 (OMIM: 608351) immunoglobulin superfa ( 431) 398 58.0 5e-08
XP_011510771 (OMIM: 608351) PREDICTED: immunoglobu ( 430) 394 57.5 6.8e-08
NP_689751 (OMIM: 608351) immunoglobulin superfamil ( 430) 394 57.5 6.8e-08
XP_011510772 (OMIM: 608351) PREDICTED: immunoglobu ( 430) 394 57.5 6.8e-08
NP_001316849 (OMIM: 606011) V-set and immunoglobul ( 284) 384 56.3 1.1e-07
NP_872413 (OMIM: 300620) V-set and immunoglobulin ( 387) 379 55.8 2e-07
XP_006713580 (OMIM: 608351) PREDICTED: immunoglobu ( 372) 371 54.9 3.7e-07
XP_016861278 (OMIM: 608351) PREDICTED: immunoglobu ( 372) 371 54.9 3.7e-07
NP_005805 (OMIM: 602171) cell surface A33 antigen ( 319) 364 54.0 5.7e-07
NP_001193995 (OMIM: 602621) coxsackievirus and ade ( 352) 364 54.1 6.2e-07
XP_011527778 (OMIM: 602621) PREDICTED: coxsackievi ( 348) 359 53.5 9.1e-07
XP_011510776 (OMIM: 608351) PREDICTED: immunoglobu ( 323) 345 51.9 2.6e-06
XP_011510773 (OMIM: 608351) PREDICTED: immunoglobu ( 429) 345 52.0 3.2e-06
XP_011529238 (OMIM: 300620) PREDICTED: V-set and i ( 442) 341 51.5 4.5e-06
XP_005262184 (OMIM: 300620) PREDICTED: V-set and i ( 449) 341 51.5 4.6e-06
NP_001164024 (OMIM: 300620) V-set and immunoglobul ( 423) 336 51.0 6.4e-06
XP_016855494 (OMIM: 602171) PREDICTED: cell surfac ( 211) 321 49.0 1.2e-05
>>NP_620411 (OMIM: 614281) endothelial cell-selective ad (390 aa)
initn: 2596 init1: 2596 opt: 2596 Z-score: 1614.7 bits: 307.6 E(85289): 3.4e-83
Smith-Waterman score: 2596; 100.0% identity (100.0% similar) in 390 aa overlap (1-390:1-390)
10 20 30 40 50 60
pF1KE6 MISLPGPLVTNLLRFLFLGLSALAPPSRAQLQLHLPANRLQAVEGGEVVLPAWYTLHGEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 MISLPGPLVTNLLRFLFLGLSALAPPSRAQLQLHLPANRLQAVEGGEVVLPAWYTLHGEV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 SSSQPWEVPFVMWFFKQKEKEDQVLSYINGVTTSKPGVSLVYSMPSRNLSLRLEGLQEKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 SSSQPWEVPFVMWFFKQKEKEDQVLSYINGVTTSKPGVSLVYSMPSRNLSLRLEGLQEKD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 SGPYSCSVNVQDKQGKSRGHSIKTLELNVLVPPAPPSCRLQGVPHVGANVTLSCQSPRSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 SGPYSCSVNVQDKQGKSRGHSIKTLELNVLVPPAPPSCRLQGVPHVGANVTLSCQSPRSK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 PAVQYQWDRQLPSFQTFFAPALDVIRGSLSLTNLSSSMAGVYVCKAHNEVGTAQCNVTLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 PAVQYQWDRQLPSFQTFFAPALDVIRGSLSLTNLSSSMAGVYVCKAHNEVGTAQCNVTLE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 VSTGPGAAVVAGAVVGTLVGLGLLAGLVLLYHRRGKALEEPANDIKEDAIAPRTLPWPKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 VSTGPGAAVVAGAVVGTLVGLGLLAGLVLLYHRRGKALEEPANDIKEDAIAPRTLPWPKS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 SDTISKNGTLSSVTSARALRPPHGPPRPGALTPTPSLSSQALPSPRLPTTDGAHPQPISP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 SDTISKNGTLSSVTSARALRPPHGPPRPGALTPTPSLSSQALPSPRLPTTDGAHPQPISP
310 320 330 340 350 360
370 380 390
pF1KE6 IPGGVSSSGLSRMGAVPVMVPAQSQAGSLV
::::::::::::::::::::::::::::::
NP_620 IPGGVSSSGLSRMGAVPVMVPAQSQAGSLV
370 380 390
>>XP_011541362 (OMIM: 614281) PREDICTED: endothelial cel (287 aa)
initn: 1910 init1: 1910 opt: 1910 Z-score: 1195.5 bits: 229.6 E(85289): 7.5e-60
Smith-Waterman score: 1910; 100.0% identity (100.0% similar) in 287 aa overlap (104-390:1-287)
80 90 100 110 120 130
pF1KE6 FFKQKEKEDQVLSYINGVTTSKPGVSLVYSMPSRNLSLRLEGLQEKDSGPYSCSVNVQDK
::::::::::::::::::::::::::::::
XP_011 MPSRNLSLRLEGLQEKDSGPYSCSVNVQDK
10 20 30
140 150 160 170 180 190
pF1KE6 QGKSRGHSIKTLELNVLVPPAPPSCRLQGVPHVGANVTLSCQSPRSKPAVQYQWDRQLPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QGKSRGHSIKTLELNVLVPPAPPSCRLQGVPHVGANVTLSCQSPRSKPAVQYQWDRQLPS
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE6 FQTFFAPALDVIRGSLSLTNLSSSMAGVYVCKAHNEVGTAQCNVTLEVSTGPGAAVVAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FQTFFAPALDVIRGSLSLTNLSSSMAGVYVCKAHNEVGTAQCNVTLEVSTGPGAAVVAGA
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE6 VVGTLVGLGLLAGLVLLYHRRGKALEEPANDIKEDAIAPRTLPWPKSSDTISKNGTLSSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VVGTLVGLGLLAGLVLLYHRRGKALEEPANDIKEDAIAPRTLPWPKSSDTISKNGTLSSV
160 170 180 190 200 210
320 330 340 350 360 370
pF1KE6 TSARALRPPHGPPRPGALTPTPSLSSQALPSPRLPTTDGAHPQPISPIPGGVSSSGLSRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TSARALRPPHGPPRPGALTPTPSLSSQALPSPRLPTTDGAHPQPISPIPGGVSSSGLSRM
220 230 240 250 260 270
380 390
pF1KE6 GAVPVMVPAQSQAGSLV
:::::::::::::::::
XP_011 GAVPVMVPAQSQAGSLV
280
>>XP_005271777 (OMIM: 614281) PREDICTED: endothelial cel (211 aa)
initn: 1236 init1: 1236 opt: 1236 Z-score: 783.8 bits: 152.9 E(85289): 6.4e-37
Smith-Waterman score: 1236; 100.0% identity (100.0% similar) in 190 aa overlap (201-390:22-211)
180 190 200 210 220 230
pF1KE6 TLSCQSPRSKPAVQYQWDRQLPSFQTFFAPALDVIRGSLSLTNLSSSMAGVYVCKAHNEV
::::::::::::::::::::::::::::::
XP_005 MISLPGPLVTNLLRFLFLGLSALDVIRGSLSLTNLSSSMAGVYVCKAHNEV
10 20 30 40 50
240 250 260 270 280 290
pF1KE6 GTAQCNVTLEVSTGPGAAVVAGAVVGTLVGLGLLAGLVLLYHRRGKALEEPANDIKEDAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GTAQCNVTLEVSTGPGAAVVAGAVVGTLVGLGLLAGLVLLYHRRGKALEEPANDIKEDAI
60 70 80 90 100 110
300 310 320 330 340 350
pF1KE6 APRTLPWPKSSDTISKNGTLSSVTSARALRPPHGPPRPGALTPTPSLSSQALPSPRLPTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 APRTLPWPKSSDTISKNGTLSSVTSARALRPPHGPPRPGALTPTPSLSSQALPSPRLPTT
120 130 140 150 160 170
360 370 380 390
pF1KE6 DGAHPQPISPIPGGVSSSGLSRMGAVPVMVPAQSQAGSLV
::::::::::::::::::::::::::::::::::::::::
XP_005 DGAHPQPISPIPGGVSSSGLSRMGAVPVMVPAQSQAGSLV
180 190 200 210
>>NP_055127 (OMIM: 606011) V-set and immunoglobulin doma (327 aa)
initn: 160 init1: 98 opt: 422 Z-score: 281.6 bits: 60.6 E(85289): 6.1e-09
Smith-Waterman score: 427; 32.4% identity (59.9% similar) in 339 aa overlap (1-321:1-324)
10 20 30 40 50 60
pF1KE6 MISLPGPLVTNLLRFLFLGLSALAPPSRAQLQLHLPANRLQAVEGGEVVLPAWYTLHGEV
: ::::.. . : . :: ::.:: .....:.. :.. : . : :. :
NP_055 MAELPGPFLCGAL-LGFLCLSGLA------VEVKVPTEPLSTPLGKTAELTCTYSTS--V
10 20 30 40 50
70 80 90 100 110
pF1KE6 SSSQPWEVPFVMWFFKQKEKEDQVLSYING---VTTSKPG-VSLVYSMPSRNL-SLRLEG
..: : ::. : . .: . :: : :: :::. . :. .. .:.:
NP_055 GDSFALEWSFVQPG-KPISESHPILYFTNGHLYPTGSKSKRVSLLQNPPTVGVATLKLTD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE6 LQEKDSGPYSCSVNVQDKQGKSRGHSIKTLELNVLVPPAPPSCRLQGVPHVGANVTLSCQ
.. .:.: : :.:: . ... ..:.:::::. : : .: ::....: :.
NP_055 VHPSDTGTYLCQVN---NPPDFYTNGLGLINLTVLVPPSNPLCSQSGQTSVGGSTALRCS
120 130 140 150 160
180 190 200 210 220 230
pF1KE6 SPRSKPAVQYQWDRQLPSFQTFFAPAL--DVIRGSLSLTNLSSSMAGVYVCKAHNEVGTA
: .. : :.: : : .: : .. : . :.: ::::: . .:.: : : :..:.:
NP_055 SSEGAPKPVYNWVR-LGTFPTPSPGSMVQDEVSGQLILTNLSLTSSGTYRCVATNQMGSA
170 180 190 200 210 220
240 250 260 270 280
pF1KE6 QCNVTLEVSTGPGAAVVAGAVVGTLVGLGLLA----GLVLLYHRRGKALEEP--ANDIKE
.:..:: : : :. . ::::..:.:.:. ::. :: . ..::: .: ..:..:
NP_055 SCELTLSV-TEPSQGRVAGALIGVLLGVLLLSVAAFCLVRFQKERGKKPKETYGGSDLRE
230 240 250 260 270 280
290 300 310 320 330 340
pF1KE6 DAIAP-----RTLPWPKSSDTISKNGTLSSVTSARALRPPHGPPRPGALTPTPSLSSQAL
::::: . .:. . . .. :.::.... :
NP_055 DAIAPGISEHTCMRADSSKGFLERPSSASTVTTTKSKLPMVV
290 300 310 320
350 360 370 380 390
pF1KE6 PSPRLPTTDGAHPQPISPIPGGVSSSGLSRMGAVPVMVPAQSQAGSLV
>>NP_079045 (OMIM: 611693,615237) CXADR-like membrane pr (373 aa)
initn: 191 init1: 147 opt: 403 Z-score: 269.1 bits: 58.5 E(85289): 3e-08
Smith-Waterman score: 403; 30.7% identity (59.8% similar) in 336 aa overlap (71-386:49-369)
50 60 70 80 90
pF1KE6 QAVEGGEVVLPAWYTLHGEVSSSQPWEVPFVMWFFKQKEKEDQV-LSY-----INGVTTS
. :.. ..: ...: ..: :..:
NP_079 THTEIKRVAEEKVTLPCHHQLGLPEKDTLDIEWLLTDNEGNQKVVITYSSRHVYNNLTEE
20 30 40 50 60 70
100 110 120 130 140 150
pF1KE6 KPG-VSLVYSMPSRNLSLRLEGLQEKDSGPYSCSVNVQDKQGKSRGHSIKTLELNVLVPP
. : :... .. . . ::..: :. .: : :.:.:. . . : : : :.::: :
NP_079 QKGRVAFASNFLAGDASLQIEPLKPSDEGRYTCKVKNSGRYVWS--HVI----LKVLVRP
80 90 100 110 120 130
160 170 180 190 200
pF1KE6 APPSCRLQGVPHVGANVTLSCQSPRSKPAVQYQWDR--QLPSFQTFFAPA--LDVIR-GS
. :.:.:.: :...::.:.: . . : :.: . . . . : .: . :
NP_079 SKPKCELEGELTEGSDLTLQCESSSGTEPIVYYWQRIREKEGEDERLPPKSRIDYNHPGR
140 150 160 170 180 190
210 220 230 240 250 260
pF1KE6 LSLTNLSSSMAGVYVCKAHNEVGTAQCNVTLEVSTGPGAAVVAGAVVGTLVGLGLLAGLV
. : ::. :..:.: : : ::.: .: : . :. . ..:::::.: ..: :. ::
NP_079 VLLQNLTMSYSGLYQCTAGNEAGKESCVVRVTVQYVQSIGMVAGAVTGIVAGALLIFLLV
200 210 220 230 240 250
270 280 290 300 310 320
pF1KE6 -LLYHRRGKAL---EEPANDIKEDAIAPRT-LPWPKSSDT---ISKNGTLSSVTSARALR
:: .:. : :: :.:.::: ::.. : :.::.. :..:. :. ..: .
NP_079 WLLIRRKDKERYEEEERPNEIREDAEAPKARLVKPSSSSSGSRSSRSGSSSTRSTANSAS
260 270 280 290 300 310
330 340 350 360 370 380
pF1KE6 PPHGPPRPGALTPTPSLSSQALPSPRLPTTDGAHPQPISPIPGGVSSSGLSRMGAVPVMV
. : .: :.:..:: : : . :..:. : ..:.. ..: :.
NP_079 RSQRTLSTDA-APQPGLATQAY-SLVGPEVRGSEPKK-------VHHANLTKAETTPSMI
320 330 340 350 360
390
pF1KE6 PAQSQAGSLV
:.::.:
NP_079 PSQSRAFQTV
370
>>NP_001015887 (OMIM: 608351) immunoglobulin superfamily (431 aa)
initn: 400 init1: 228 opt: 398 Z-score: 265.1 bits: 58.0 E(85289): 5e-08
Smith-Waterman score: 400; 27.5% identity (58.4% similar) in 353 aa overlap (1-338:1-336)
10 20 30 40 50
pF1KE6 MISLPGPLVTNLLRFLFLGLSALAPPSRAQLQLHLPANRLQAVEGGEVVLPAWYTLHGE-
: : .::. .:.:.: ..: :.:.. . .:...: .::: .: .
NP_001 MTSQRSPLAP----LLLLSLHGVA----ASLEVSESPGSIQVARGQPAVLPCTFTTSAAL
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 VSSSQPWEV-PFVMWFFKQKEKEDQVLSYING-VTTSKP---G-VSLVYSMPSRNLSLRL
.. . : : :. .. .. .::. : .: . . : : :... .::. :.:. .
NP_001 INLNVIWMVTPL-----SNANQPEQVILYQGGQMFDGAPRFHGRVGFTGTMPATNVSIFI
60 70 80 90 100
120 130 140 150 160 170
pF1KE6 EGLQEKDSGPYSCSVNVQDKQGKSRGHSIKTLELNVLVPPAPPSCRLQGVPHVGANVTLS
.. : .:.: :.: :: : :..: . :.:::::. : :..:: .:..: :
NP_001 NNTQLSDTGTYQCLVNNLPDIG---GRNIGVTGLTVLVPPSAPHCQIQGSQDIGSDVILL
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE6 CQSPRSKPAVQYQWDRQLPSFQTFFAPALDVIRGSLSLTNLSSSMAGVYVCKAHNEVGTA
:.: .. : : :.. ... . . : ..:.... :.:. .:.: : : : .::.
NP_001 CSSEEGIPRPTYLWEKLDNTLKLPPTATQDQVQGTVTIRNISALSSGLYQCVASNAIGTS
170 180 190 200 210 220
240 250 260 270 280
pF1KE6 QCNVTLEV-STGP-GAAVVAGAV-VGTLV---GLGLLAGLVLLYHRRGKALEEPA--NDI
: . :.: : : . ...:::. .:... ..:. : . .. ..: :: :.:
NP_001 TCLLDLQVISPQPRNIGLIAGAIGTGAVIIIFCIALILGAFFYWRSKNKEEEEEEIPNEI
230 240 250 260 270 280
290 300 310 320 330 340
pF1KE6 KEDAIAPRTLPWPKSSDTISKNGTLSSVTSARALRPPHGPPRPGALTPTPSLSSQALPSP
.:: . :. ::.. . ...::. : . : . : :.:
NP_001 REDDLPPKCSSAKAFHTEISSSDN-NTLTSSNAYNSRYWSNNPKVHRNTESVSHFSDLGQ
290 300 310 320 330 340
350 360 370 380 390
pF1KE6 RLPTTDGAHPQPISPIPGGVSSSGLSRMGAVPVMVPAQSQAGSLV
NP_001 SFSFHSGNANIPSIYANGTHLVPGQHKTLVVTANRGSSPQVMSRSNGSVSRKPRPPHTHS
350 360 370 380 390 400
>>XP_011510771 (OMIM: 608351) PREDICTED: immunoglobulin (430 aa)
initn: 400 init1: 228 opt: 394 Z-score: 262.7 bits: 57.5 E(85289): 6.8e-08
Smith-Waterman score: 394; 27.4% identity (58.8% similar) in 325 aa overlap (29-338:20-335)
10 20 30 40 50
pF1KE6 MISLPGPLVTNLLRFLFLGLSALAPPSRAQLQLHLPANRLQAVEGGEVVLPAWYTLHGE-
:.:.. . .:...: .::: .: .
XP_011 MSLVELLLWWNCFSRTGVAASLEVSESPGSIQVARGQPAVLPCTFTTSAAL
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 VSSSQPWEV-PFVMWFFKQKEKEDQVLSYING-VTTSKP---G-VSLVYSMPSRNLSLRL
.. . : : :. .. .. .::. : .: . . : : :... .::. :.:. .
XP_011 INLNVIWMVTPL-----SNANQPEQVILYQGGQMFDGAPRFHGRVGFTGTMPATNVSIFI
60 70 80 90 100
120 130 140 150 160 170
pF1KE6 EGLQEKDSGPYSCSVNVQDKQGKSRGHSIKTLELNVLVPPAPPSCRLQGVPHVGANVTLS
.. : .:.: :.: :: : :..: . :.:::::. : :..:: .:..: :
XP_011 NNTQLSDTGTYQCLVNNLPDIG---GRNIGVTGLTVLVPPSAPHCQIQGSQDIGSDVILL
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE6 CQSPRSKPAVQYQWDRQLPSFQTFFAPALDVIRGSLSLTNLSSSMAGVYVCKAHNEVGTA
:.: .. : : :.. ... . . : ..:.... :.:. .:.: : : : .::.
XP_011 CSSEEGIPRPTYLWEKLDNTLKLPPTATQDQVQGTVTIRNISALSSGLYQCVASNAIGTS
170 180 190 200 210 220
240 250 260 270 280
pF1KE6 QCNVTLEV-STGP-GAAVVAGAV-VGTLV---GLGLLAGLVLLYHRRGKALEEPA--NDI
: . :.: : : . ...:::. .:... ..:. : . .. ..: :: :.:
XP_011 TCLLDLQVISPQPRNIGLIAGAIGTGAVIIIFCIALILGAFFYWRSKNKEEEEEEIPNEI
230 240 250 260 270 280
290 300 310 320 330 340
pF1KE6 KEDAIAPRTLPWPKSSDTISKNGTLSSVTSARALRPPHGPPRPGALTPTPSLSSQALPSP
.:: . :. ::.. . ...::. : . : . : :.:
XP_011 REDDLPPKCSSAKAFHTEISSSDN-NTLTSSNAYNSRYWSNNPKVHRNTESVSHFSDLGQ
290 300 310 320 330 340
350 360 370 380 390
pF1KE6 RLPTTDGAHPQPISPIPGGVSSSGLSRMGAVPVMVPAQSQAGSLV
XP_011 SFSFHSGNANIPSIYANGTHLVPGQHKTLVVTANRGSSPQVMSRSNGSVSRKPRPPHTHS
350 360 370 380 390 400
>>NP_689751 (OMIM: 608351) immunoglobulin superfamily me (430 aa)
initn: 400 init1: 228 opt: 394 Z-score: 262.7 bits: 57.5 E(85289): 6.8e-08
Smith-Waterman score: 394; 27.4% identity (58.8% similar) in 325 aa overlap (29-338:20-335)
10 20 30 40 50
pF1KE6 MISLPGPLVTNLLRFLFLGLSALAPPSRAQLQLHLPANRLQAVEGGEVVLPAWYTLHGE-
:.:.. . .:...: .::: .: .
NP_689 MSLVELLLWWNCFSRTGVAASLEVSESPGSIQVARGQPAVLPCTFTTSAAL
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 VSSSQPWEV-PFVMWFFKQKEKEDQVLSYING-VTTSKP---G-VSLVYSMPSRNLSLRL
.. . : : :. .. .. .::. : .: . . : : :... .::. :.:. .
NP_689 INLNVIWMVTPL-----SNANQPEQVILYQGGQMFDGAPRFHGRVGFTGTMPATNVSIFI
60 70 80 90 100
120 130 140 150 160 170
pF1KE6 EGLQEKDSGPYSCSVNVQDKQGKSRGHSIKTLELNVLVPPAPPSCRLQGVPHVGANVTLS
.. : .:.: :.: :: : :..: . :.:::::. : :..:: .:..: :
NP_689 NNTQLSDTGTYQCLVNNLPDIG---GRNIGVTGLTVLVPPSAPHCQIQGSQDIGSDVILL
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE6 CQSPRSKPAVQYQWDRQLPSFQTFFAPALDVIRGSLSLTNLSSSMAGVYVCKAHNEVGTA
:.: .. : : :.. ... . . : ..:.... :.:. .:.: : : : .::.
NP_689 CSSEEGIPRPTYLWEKLDNTLKLPPTATQDQVQGTVTIRNISALSSGLYQCVASNAIGTS
170 180 190 200 210 220
240 250 260 270 280
pF1KE6 QCNVTLEV-STGP-GAAVVAGAV-VGTLV---GLGLLAGLVLLYHRRGKALEEPA--NDI
: . :.: : : . ...:::. .:... ..:. : . .. ..: :: :.:
NP_689 TCLLDLQVISPQPRNIGLIAGAIGTGAVIIIFCIALILGAFFYWRSKNKEEEEEEIPNEI
230 240 250 260 270 280
290 300 310 320 330 340
pF1KE6 KEDAIAPRTLPWPKSSDTISKNGTLSSVTSARALRPPHGPPRPGALTPTPSLSSQALPSP
.:: . :. ::.. . ...::. : . : . : :.:
NP_689 REDDLPPKCSSAKAFHTEISSSDN-NTLTSSNAYNSRYWSNNPKVHRNTESVSHFSDLGQ
290 300 310 320 330 340
350 360 370 380 390
pF1KE6 RLPTTDGAHPQPISPIPGGVSSSGLSRMGAVPVMVPAQSQAGSLV
NP_689 SFSFHSGNANIPSIYANGTHLVPGQHKTLVVTANRGSSPQVMSRSNGSVSRKPRPPHTHS
350 360 370 380 390 400
>>XP_011510772 (OMIM: 608351) PREDICTED: immunoglobulin (430 aa)
initn: 400 init1: 228 opt: 394 Z-score: 262.7 bits: 57.5 E(85289): 6.8e-08
Smith-Waterman score: 394; 27.4% identity (58.8% similar) in 325 aa overlap (29-338:20-335)
10 20 30 40 50
pF1KE6 MISLPGPLVTNLLRFLFLGLSALAPPSRAQLQLHLPANRLQAVEGGEVVLPAWYTLHGE-
:.:.. . .:...: .::: .: .
XP_011 MSLVELLLWWNCFSRTGVAASLEVSESPGSIQVARGQPAVLPCTFTTSAAL
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 VSSSQPWEV-PFVMWFFKQKEKEDQVLSYING-VTTSKP---G-VSLVYSMPSRNLSLRL
.. . : : :. .. .. .::. : .: . . : : :... .::. :.:. .
XP_011 INLNVIWMVTPL-----SNANQPEQVILYQGGQMFDGAPRFHGRVGFTGTMPATNVSIFI
60 70 80 90 100
120 130 140 150 160 170
pF1KE6 EGLQEKDSGPYSCSVNVQDKQGKSRGHSIKTLELNVLVPPAPPSCRLQGVPHVGANVTLS
.. : .:.: :.: :: : :..: . :.:::::. : :..:: .:..: :
XP_011 NNTQLSDTGTYQCLVNNLPDIG---GRNIGVTGLTVLVPPSAPHCQIQGSQDIGSDVILL
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE6 CQSPRSKPAVQYQWDRQLPSFQTFFAPALDVIRGSLSLTNLSSSMAGVYVCKAHNEVGTA
:.: .. : : :.. ... . . : ..:.... :.:. .:.: : : : .::.
XP_011 CSSEEGIPRPTYLWEKLDNTLKLPPTATQDQVQGTVTIRNISALSSGLYQCVASNAIGTS
170 180 190 200 210 220
240 250 260 270 280
pF1KE6 QCNVTLEV-STGP-GAAVVAGAV-VGTLV---GLGLLAGLVLLYHRRGKALEEPA--NDI
: . :.: : : . ...:::. .:... ..:. : . .. ..: :: :.:
XP_011 TCLLDLQVISPQPRNIGLIAGAIGTGAVIIIFCIALILGAFFYWRSKNKEEEEEEIPNEI
230 240 250 260 270 280
290 300 310 320 330 340
pF1KE6 KEDAIAPRTLPWPKSSDTISKNGTLSSVTSARALRPPHGPPRPGALTPTPSLSSQALPSP
.:: . :. ::.. . ...::. : . : . : :.:
XP_011 REDDLPPKCSSAKAFHTEISSSDN-NTLTSSNAYNSRYWSNNPKVHRNTESVSHFSDLGQ
290 300 310 320 330 340
350 360 370 380 390
pF1KE6 RLPTTDGAHPQPISPIPGGVSSSGLSRMGAVPVMVPAQSQAGSLV
XP_011 SFSFHSGNANIPSIYANGTHLVPGQHKTLVVTANRGSSPQVMSRSNGSVSRKPRPPHTHS
350 360 370 380 390 400
>>NP_001316849 (OMIM: 606011) V-set and immunoglobulin d (284 aa)
initn: 121 init1: 98 opt: 384 Z-score: 259.1 bits: 56.3 E(85289): 1.1e-07
Smith-Waterman score: 384; 33.7% identity (60.1% similar) in 291 aa overlap (1-280:1-276)
10 20 30 40 50 60
pF1KE6 MISLPGPLVTNLLRFLFLGLSALAPPSRAQLQLHLPANRLQAVEGGEVVLPAWYTLHGEV
: ::::.. . : . :: ::.:: .....:.. :.. : . : :. :
NP_001 MAELPGPFLCGAL-LGFLCLSGLA------VEVKVPTEPLSTPLGKTAELTCTYST--SV
10 20 30 40 50
70 80 90 100 110
pF1KE6 SSSQPWEVPFVMWFFKQKEKEDQVLSYING---VTTSKPG-VSLVYSMPSRNL-SLRLEG
..: : ::. : . .: . :: : :: :::. . :. .. .:.:
NP_001 GDSFALEWSFVQPG-KPISESHPILYFTNGHLYPTGSKSKRVSLLQNPPTVGVATLKLTD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE6 LQEKDSGPYSCSVNVQDKQGKSRGHSIKTLELNVLVPPAPPSCRLQGVPHVGANVTLSCQ
.. .:.: : :.:: . ... ..:.:::::. : : .: ::....: :.
NP_001 VHPSDTGTYLCQVN---NPPDFYTNGLGLINLTVLVPPSNPLCSQSGQTSVGGSTALRCS
120 130 140 150 160
180 190 200 210 220 230
pF1KE6 SPRSKPAVQYQWDRQLPSFQTFFAPAL--DVIRGSLSLTNLSSSMAGVYVCKAHNEVGTA
: .. : :.: : : .: : .. : . :.: ::::: . .:.: : : :..:.:
NP_001 SSEGAPKPVYNWVR-LGTFPTPSPGSMVQDEVSGQLILTNLSLTSSGTYRCVATNQMGSA
170 180 190 200 210 220
240 250 260 270 280
pF1KE6 QCNVTLEVSTGPGAAVVAGAVVGTLVGLGLLA----GLVLLYHRRGKALEEPANDIKEDA
.:..:: : : :. . ::::..:.:.:. ::. :: . ..::: .:
NP_001 SCELTLSV-TEPSQGRVAGALIGVLLGVLLLSVAAFCLVRFQKERGKKPKETYGGSDLR
230 240 250 260 270 280
290 300 310 320 330 340
pF1KE6 IAPRTLPWPKSSDTISKNGTLSSVTSARALRPPHGPPRPGALTPTPSLSSQALPSPRLPT
390 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 12:10:26 2016 done: Tue Nov 8 12:10:28 2016
Total Scan time: 7.590 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]