FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6328, 440 aa
  1>>>pF1KE6328 440 - 440 aa - 440 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2914+/-0.00134; mu= 7.1268+/- 0.080
 mean_var=121.9786+/-25.403, 0's: 0 Z-trim(103.2): 161  B-trim: 21 in 1/50
 Lambda= 0.116127
 statistics sampled from 7127 (7305) to 7127 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.576), E-opt: 0.2 (0.224), width:  16
 Scan time:  2.410

The best scores are:                                      opt bits E(32554)
CCDS11265.1 OMG gene_id:4974|Hs108|chr17           ( 440) 2865 491.9 5.2e-139


>>CCDS11265.1 OMG gene_id:4974|Hs108|chr17                (440 aa)
 initn: 2865 init1: 2865 opt: 2865  Z-score: 2609.1  bits: 491.9 E(32554): 5.2e-139
Smith-Waterman score: 2865; 100.0% identity (100.0% similar) in 440 aa overlap (1-440:1-440)

               10        20        30        40        50        60
pF1KE6 MEYQILKMSLCLFILLFLTPGILCICPLQCICTERHRHVDCSGRNLSTLPSGLQENIIHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEYQILKMSLCLFILLFLTPGILCICPLQCICTERHRHVDCSGRNLSTLPSGLQENIIHL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 NLSYNHFTDLHNQLTQYTNLRTLDISNNRLESLPAHLPRSLWNMSAANNNIKLLDKSDTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NLSYNHFTDLHNQLTQYTNLRTLDISNNRLESLPAHLPRSLWNMSAANNNIKLLDKSDTA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 YQWNLKYLDVSKNMLEKVVLIKNTLRSLEVLNLSSNKLWTVPTNMPSKLHIVDLSNNSLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YQWNLKYLDVSKNMLEKVVLIKNTLRSLEVLNLSSNKLWTVPTNMPSKLHIVDLSNNSLT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 QILPGTLINLTNLTHLYLHNNKFTFIPDQSFDQLFQLQEITLYNNRWSCDHKQNITYLLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QILPGTLINLTNLTHLYLHNNKFTFIPDQSFDQLFQLQEITLYNNRWSCDHKQNITYLLK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 WMMETKAHVIGTPCSTQISSLKEHNMYPTPSGFTSSLFTVSGMQTVDTINSLSVVTQPKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 WMMETKAHVIGTPCSTQISSLKEHNMYPTPSGFTSSLFTVSGMQTVDTINSLSVVTQPKV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 TKIPKQYRTKETTFGATLSKDTTFTSTDKAFVPYPEDTSTETINSHEAAAATLTIHLQDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TKIPKQYRTKETTFGATLSKDTTFTSTDKAFVPYPEDTSTETINSHEAAAATLTIHLQDG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 MVTNTSLTSSTKSSPTPMTLSITSGMPNNFSEMPQQSTTLNLWREETTTNVKTPLPSVAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MVTNTSLTSSTKSSPTPMTLSITSGMPNNFSEMPQQSTTLNLWREETTTNVKTPLPSVAN
              370       380       390       400       410       420

              430       440
pF1KE6 AWKVNASFLLLLNVVVMLAV
       ::::::::::::::::::::
CCDS11 AWKVNASFLLLLNVVVMLAV
              430       440




440 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:09:11 2016 done: Tue Nov  8 12:09:11 2016
 Total Scan time:  2.410 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]