FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6327, 314 aa
  1>>>pF1KE6327 314 - 314 aa - 314 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3919+/-0.000906; mu= 14.6322+/- 0.055
 mean_var=56.7349+/-11.279, 0's: 0 Z-trim(104.2): 21  B-trim: 0 in 0/50
 Lambda= 0.170274
 statistics sampled from 7788 (7791) to 7788 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.619), E-opt: 0.2 (0.239), width:  16
 Scan time:  1.960

The best scores are:                                      opt bits E(32554)
CCDS10597.1 CRYM gene_id:1428|Hs108|chr16          ( 314) 2000 499.6 1.3e-141


>>CCDS10597.1 CRYM gene_id:1428|Hs108|chr16               (314 aa)
 initn: 2000 init1: 2000 opt: 2000  Z-score: 2655.8  bits: 499.6 E(32554): 1.3e-141
Smith-Waterman score: 2000; 100.0% identity (100.0% similar) in 314 aa overlap (1-314:1-314)

               10        20        30        40        50        60
pF1KE6 MSRVPAFLSAAEVEEHLRSSSLLIPPLETALANFSSGPEGGVMQPVRTVVPVTKHRGYLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSRVPAFLSAAEVEEHLRSSSLLIPPLETALANFSSGPEGGVMQPVRTVVPVTKHRGYLG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VMPAYSAAEDALTTKLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNVITAKRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VMPAYSAAEDALTTKLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNVITAKRT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 AAVSAIATKFLKPPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AAVSAIATKFLKPPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 VQGEVRVCSSVQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVGASRPDWRELDDEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VQGEVRVCSSVQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVGASRPDWRELDDEL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 MKEAVLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVKPAHCEKTTVFKSLGMAVEDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MKEAVLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVKPAHCEKTTVFKSLGMAVEDT
              250       260       270       280       290       300

              310    
pF1KE6 VAAKLIYDSWSSGK
       ::::::::::::::
CCDS10 VAAKLIYDSWSSGK
              310    




314 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:08:35 2016 done: Tue Nov  8 12:08:35 2016
 Total Scan time:  1.960 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]