FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6324, 438 aa
  1>>>pF1KE6324 438 - 438 aa - 438 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1186+/-0.000779; mu= 18.1607+/- 0.047
 mean_var=60.2012+/-12.608, 0's: 0 Z-trim(107.1): 18  B-trim: 0 in 0/49
 Lambda= 0.165300
 statistics sampled from 9343 (9346) to 9343 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.287), width:  16
 Scan time:  2.070

The best scores are:                                      opt bits E(32554)
CCDS46968.1 ALG3 gene_id:10195|Hs108|chr3          ( 438) 3014 727.2 7.7e-210
CCDS46967.1 ALG3 gene_id:10195|Hs108|chr3          ( 390) 2562 619.4  2e-177


>>CCDS46968.1 ALG3 gene_id:10195|Hs108|chr3               (438 aa)
 initn: 3014 init1: 3014 opt: 3014  Z-score: 3880.7  bits: 727.2 E(32554): 7.7e-210
Smith-Waterman score: 3014; 100.0% identity (100.0% similar) in 438 aa overlap (1-438:1-438)

               10        20        30        40        50        60
pF1KE6 MAAGLRKRGRSGSAAQAEGLCKQWLQRAWQERRLLLREPRYTLLVAACLCLAEVGITFWV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MAAGLRKRGRSGSAAQAEGLCKQWLQRAWQERRLLLREPRYTLLVAACLCLAEVGITFWV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 IHRVAYTEIDWKAYMAEVEGVINGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYATSRGTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 IHRVAYTEIDWKAYMAEVEGVINGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYATSRGTD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 IRMAQNIFAVLYLATLLLVFLIYHQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 IRMAQNIFAVLYLATLLLVFLIYHQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 LLFLSINLLLAQRWGWGCCFFSLAVSVKMNVLLFAPGLLFLLLTQFGFRGALPKLGICAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LLFLSINLLLAQRWGWGCCFFSLAVSVKMNVLLFAPGLLFLLLTQFGFRGALPKLGICAG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 LQVVLGLPFLLENPSGYLSRSFDLGRQFLFHWTVNWRFLPEALFLHRAFHLALLTAHLTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LQVVLGLPFLLENPSGYLSRSFDLGRQFLFHWTVNWRFLPEALFLHRAFHLALLTAHLTL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 LLLFALCRWHRTGESILSLLRDPSKRKVPPQPLTPNQIVSTLFTSNFIGICFSRSLHYQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LLLFALCRWHRTGESILSLLRDPSKRKVPPQPLTPNQIVSTLFTSNFIGICFSRSLHYQF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 YVWYFHTLPYLLWAMPARWLTHLLRLLVLGLIELSWNTYPSTSCSSAALHICHAVILLQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 YVWYFHTLPYLLWAMPARWLTHLLRLLVLGLIELSWNTYPSTSCSSAALHICHAVILLQL
              370       380       390       400       410       420

              430        
pF1KE6 WLGPQPFPKSTQHSKKAH
       ::::::::::::::::::
CCDS46 WLGPQPFPKSTQHSKKAH
              430        

>>CCDS46967.1 ALG3 gene_id:10195|Hs108|chr3               (390 aa)
 initn: 2562 init1: 2562 opt: 2562  Z-score: 3299.0  bits: 619.4 E(32554): 2e-177
Smith-Waterman score: 2562; 100.0% identity (100.0% similar) in 372 aa overlap (67-438:19-390)

         40        50        60        70        80        90      
pF1KE6 REPRYTLLVAACLCLAEVGITFWVIHRVAYTEIDWKAYMAEVEGVINGTYDYTQLQGDTG
                                     ::::::::::::::::::::::::::::::
CCDS46             MFPAQAKENAGFSGCGGDTEIDWKAYMAEVEGVINGTYDYTQLQGDTG
                           10        20        30        40        

        100       110       120       130       140       150      
pF1KE6 PLVYPAGFVYIFMGLYYATSRGTDIRMAQNIFAVLYLATLLLVFLIYHQTCKVPPFVFFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PLVYPAGFVYIFMGLYYATSRGTDIRMAQNIFAVLYLATLLLVFLIYHQTCKVPPFVFFF
       50        60        70        80        90       100        

        160       170       180       190       200       210      
pF1KE6 MCCASYRVHSIFVLRLFNDPVAMVLLFLSINLLLAQRWGWGCCFFSLAVSVKMNVLLFAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MCCASYRVHSIFVLRLFNDPVAMVLLFLSINLLLAQRWGWGCCFFSLAVSVKMNVLLFAP
      110       120       130       140       150       160        

        220       230       240       250       260       270      
pF1KE6 GLLFLLLTQFGFRGALPKLGICAGLQVVLGLPFLLENPSGYLSRSFDLGRQFLFHWTVNW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GLLFLLLTQFGFRGALPKLGICAGLQVVLGLPFLLENPSGYLSRSFDLGRQFLFHWTVNW
      170       180       190       200       210       220        

        280       290       300       310       320       330      
pF1KE6 RFLPEALFLHRAFHLALLTAHLTLLLLFALCRWHRTGESILSLLRDPSKRKVPPQPLTPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RFLPEALFLHRAFHLALLTAHLTLLLLFALCRWHRTGESILSLLRDPSKRKVPPQPLTPN
      230       240       250       260       270       280        

        340       350       360       370       380       390      
pF1KE6 QIVSTLFTSNFIGICFSRSLHYQFYVWYFHTLPYLLWAMPARWLTHLLRLLVLGLIELSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QIVSTLFTSNFIGICFSRSLHYQFYVWYFHTLPYLLWAMPARWLTHLLRLLVLGLIELSW
      290       300       310       320       330       340        

        400       410       420       430        
pF1KE6 NTYPSTSCSSAALHICHAVILLQLWLGPQPFPKSTQHSKKAH
       ::::::::::::::::::::::::::::::::::::::::::
CCDS46 NTYPSTSCSSAALHICHAVILLQLWLGPQPFPKSTQHSKKAH
      350       360       370       380       390




438 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:06:42 2016 done: Tue Nov  8 12:06:42 2016
 Total Scan time:  2.070 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]