Result of FASTA (omim) for
pFN21AE6321
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6321, 337 aa
1>>>pF1KE6321 337 - 337 aa - 337 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2434+/-0.000358; mu= 18.0015+/- 0.022
mean_var=82.4064+/-16.712, 0's: 0 Z-trim(115.3): 63 B-trim: 0 in 0/55
Lambda= 0.141284
statistics sampled from 25567 (25630) to 25567 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.301), width: 16
Scan time: 5.130
The best scores are: opt bits E(85289)
XP_011528376 (OMIM: 181500,607252) PREDICTED: apol ( 337) 2163 450.4 2.6e-126
XP_011528377 (OMIM: 181500,607252) PREDICTED: apol ( 337) 2163 450.4 2.6e-126
XP_011528380 (OMIM: 181500,607252) PREDICTED: apol ( 337) 2163 450.4 2.6e-126
XP_011528378 (OMIM: 181500,607252) PREDICTED: apol ( 337) 2163 450.4 2.6e-126
XP_011528379 (OMIM: 181500,607252) PREDICTED: apol ( 337) 2163 450.4 2.6e-126
NP_112092 (OMIM: 181500,607252) apolipoprotein L2 ( 337) 2163 450.4 2.6e-126
NP_663612 (OMIM: 181500,607252) apolipoprotein L2 ( 337) 2163 450.4 2.6e-126
XP_016884213 (OMIM: 181500,607252) PREDICTED: apol ( 449) 2163 450.5 3.2e-126
NP_001130013 (OMIM: 603743,612551) apolipoprotein ( 380) 1262 266.7 5.5e-71
XP_005261853 (OMIM: 603743,612551) PREDICTED: apol ( 380) 1262 266.7 5.5e-71
NP_001130012 (OMIM: 603743,612551) apolipoprotein ( 398) 1262 266.8 5.7e-71
NP_003652 (OMIM: 603743,612551) apolipoprotein L1 ( 398) 1262 266.8 5.7e-71
NP_663318 (OMIM: 603743,612551) apolipoprotein L1 ( 414) 1262 266.8 5.8e-71
XP_006724388 (OMIM: 607253) PREDICTED: apolipoprot ( 331) 1041 221.7 1.8e-57
NP_663614 (OMIM: 607253) apolipoprotein L3 isoform ( 331) 1041 221.7 1.8e-57
XP_006724387 (OMIM: 607253) PREDICTED: apolipoprot ( 331) 1041 221.7 1.8e-57
NP_055164 (OMIM: 607253) apolipoprotein L3 isoform ( 331) 1041 221.7 1.8e-57
NP_085147 (OMIM: 607253) apolipoprotein L3 isoform ( 331) 1041 221.7 1.8e-57
XP_016884438 (OMIM: 607253) PREDICTED: apolipoprot ( 332) 1033 220.0 5.6e-57
XP_016884440 (OMIM: 607253) PREDICTED: apolipoprot ( 332) 1033 220.0 5.6e-57
XP_016884436 (OMIM: 607253) PREDICTED: apolipoprot ( 332) 1033 220.0 5.6e-57
XP_016884437 (OMIM: 607253) PREDICTED: apolipoprot ( 332) 1033 220.0 5.6e-57
XP_016884439 (OMIM: 607253) PREDICTED: apolipoprot ( 332) 1033 220.0 5.6e-57
XP_016884435 (OMIM: 607253) PREDICTED: apolipoprot ( 332) 1033 220.0 5.6e-57
NP_663615 (OMIM: 607253) apolipoprotein L3 isoform ( 402) 1033 220.1 6.4e-57
XP_011528780 (OMIM: 603743,612551) PREDICTED: apol ( 277) 952 203.4 4.6e-52
NP_085146 (OMIM: 181500,607254) apolipoprotein L4 ( 348) 653 142.6 1.2e-33
NP_663693 (OMIM: 181500,607254) apolipoprotein L4 ( 351) 653 142.6 1.2e-33
NP_663617 (OMIM: 607253) apolipoprotein L3 isoform ( 202) 583 128.1 1.6e-29
NP_663616 (OMIM: 607253) apolipoprotein L3 isoform ( 202) 583 128.1 1.6e-29
XP_016884441 (OMIM: 607253) PREDICTED: apolipoprot ( 202) 583 128.1 1.6e-29
NP_085144 (OMIM: 607256) apolipoprotein L6 [Homo s ( 343) 502 111.8 2.2e-24
XP_011528694 (OMIM: 607256) PREDICTED: apolipoprot ( 343) 502 111.8 2.2e-24
XP_006724384 (OMIM: 607255) PREDICTED: apolipoprot ( 417) 493 110.0 9e-24
XP_016884434 (OMIM: 607255) PREDICTED: apolipoprot ( 361) 460 103.3 8.6e-22
NP_085145 (OMIM: 607255) apolipoprotein L5 [Homo s ( 433) 460 103.3 9.8e-22
NP_110444 (OMIM: 612456) apolipoprotein L domain-c ( 248) 150 39.9 0.0068
NP_001123887 (OMIM: 612456) apolipoprotein L domai ( 279) 150 40.0 0.0074
>>XP_011528376 (OMIM: 181500,607252) PREDICTED: apolipop (337 aa)
initn: 2163 init1: 2163 opt: 2163 Z-score: 2388.7 bits: 450.4 E(85289): 2.6e-126
Smith-Waterman score: 2163; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337)
10 20 30 40 50 60
pF1KE6 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE
250 260 270 280 290 300
310 320 330
pF1KE6 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ
:::::::::::::::::::::::::::::::::::::
XP_011 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ
310 320 330
>>XP_011528377 (OMIM: 181500,607252) PREDICTED: apolipop (337 aa)
initn: 2163 init1: 2163 opt: 2163 Z-score: 2388.7 bits: 450.4 E(85289): 2.6e-126
Smith-Waterman score: 2163; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337)
10 20 30 40 50 60
pF1KE6 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE
250 260 270 280 290 300
310 320 330
pF1KE6 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ
:::::::::::::::::::::::::::::::::::::
XP_011 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ
310 320 330
>>XP_011528380 (OMIM: 181500,607252) PREDICTED: apolipop (337 aa)
initn: 2163 init1: 2163 opt: 2163 Z-score: 2388.7 bits: 450.4 E(85289): 2.6e-126
Smith-Waterman score: 2163; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337)
10 20 30 40 50 60
pF1KE6 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE
250 260 270 280 290 300
310 320 330
pF1KE6 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ
:::::::::::::::::::::::::::::::::::::
XP_011 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ
310 320 330
>>XP_011528378 (OMIM: 181500,607252) PREDICTED: apolipop (337 aa)
initn: 2163 init1: 2163 opt: 2163 Z-score: 2388.7 bits: 450.4 E(85289): 2.6e-126
Smith-Waterman score: 2163; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337)
10 20 30 40 50 60
pF1KE6 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE
250 260 270 280 290 300
310 320 330
pF1KE6 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ
:::::::::::::::::::::::::::::::::::::
XP_011 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ
310 320 330
>>XP_011528379 (OMIM: 181500,607252) PREDICTED: apolipop (337 aa)
initn: 2163 init1: 2163 opt: 2163 Z-score: 2388.7 bits: 450.4 E(85289): 2.6e-126
Smith-Waterman score: 2163; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337)
10 20 30 40 50 60
pF1KE6 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE
250 260 270 280 290 300
310 320 330
pF1KE6 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ
:::::::::::::::::::::::::::::::::::::
XP_011 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ
310 320 330
>>NP_112092 (OMIM: 181500,607252) apolipoprotein L2 [Hom (337 aa)
initn: 2163 init1: 2163 opt: 2163 Z-score: 2388.7 bits: 450.4 E(85289): 2.6e-126
Smith-Waterman score: 2163; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337)
10 20 30 40 50 60
pF1KE6 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE
250 260 270 280 290 300
310 320 330
pF1KE6 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ
:::::::::::::::::::::::::::::::::::::
NP_112 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ
310 320 330
>>NP_663612 (OMIM: 181500,607252) apolipoprotein L2 [Hom (337 aa)
initn: 2163 init1: 2163 opt: 2163 Z-score: 2388.7 bits: 450.4 E(85289): 2.6e-126
Smith-Waterman score: 2163; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337)
10 20 30 40 50 60
pF1KE6 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE
250 260 270 280 290 300
310 320 330
pF1KE6 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ
:::::::::::::::::::::::::::::::::::::
NP_663 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ
310 320 330
>>XP_016884213 (OMIM: 181500,607252) PREDICTED: apolipop (449 aa)
initn: 2163 init1: 2163 opt: 2163 Z-score: 2387.0 bits: 450.5 E(85289): 3.2e-126
Smith-Waterman score: 2163; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:113-449)
10 20 30
pF1KE6 MNPESSIFIEDYLKYFQDQVSRENLLQLLT
::::::::::::::::::::::::::::::
XP_016 AGTRVKENLPVWTVTGELQGKPLGNPAAGTMNPESSIFIEDYLKYFQDQVSRENLLQLLT
90 100 110 120 130 140
40 50 60 70 80 90
pF1KE6 DDEAWNGFVAAAELPRDEADELRKALNKLASHMVMKDKNRHDKDQQHRQWFLKEFPRLKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DDEAWNGFVAAAELPRDEADELRKALNKLASHMVMKDKNRHDKDQQHRQWFLKEFPRLKR
150 160 170 180 190 200
100 110 120 130 140 150
pF1KE6 ELEDHIRKLRALAEEVEQVHRGTTIANVVSNSVGTTSGILTLLGLGLAPFTEGISFVLLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELEDHIRKLRALAEEVEQVHRGTTIANVVSNSVGTTSGILTLLGLGLAPFTEGISFVLLD
210 220 230 240 250 260
160 170 180 190 200 210
pF1KE6 TGMGLGAAAAVAGITCSVVELVNKLRARAQARNLDQSGTNVAKVMKEFVGGNTPNVLTLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TGMGLGAAAAVAGITCSVVELVNKLRARAQARNLDQSGTNVAKVMKEFVGGNTPNVLTLV
270 280 290 300 310 320
220 230 240 250 260 270
pF1KE6 DNWYQVTQGIGRNIRAIRRARANPQLGAYAPPPHVIGRISAEGGEQVERVVEGPAQAMSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DNWYQVTQGIGRNIRAIRRARANPQLGAYAPPPHVIGRISAEGGEQVERVVEGPAQAMSR
330 340 350 360 370 380
280 290 300 310 320 330
pF1KE6 GTMIVGAATGGILLLLDVVSLAYESKHLLEGAKSESAEELKKRAQELEGKLNFLTKIHEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GTMIVGAATGGILLLLDVVSLAYESKHLLEGAKSESAEELKKRAQELEGKLNFLTKIHEM
390 400 410 420 430 440
pF1KE6 LQPGQDQ
:::::::
XP_016 LQPGQDQ
>>NP_001130013 (OMIM: 603743,612551) apolipoprotein L1 i (380 aa)
initn: 1267 init1: 973 opt: 1262 Z-score: 1395.4 bits: 266.7 E(85289): 5.5e-71
Smith-Waterman score: 1262; 61.8% identity (82.8% similar) in 338 aa overlap (1-336:42-379)
10 20 30
pF1KE6 MNPESSIFIEDYLKYFQDQVSRENLLQLLT
:.::::::::: .:::...:: .::: :::
NP_001 LCIWVQQNVPSGTDTGDPQSKPLGDWAAGTMDPESSIFIEDAIKYFKEKVSTQNLLLLLT
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE6 DDEAWNGFVAAAELPRDEADELRKALNKLASHMVMKDKNRHDKDQQHRQWFLKEFPRLKR
:.::::::::::::::.:::::::::..:: .:.::::: ::: ::.:.::::::::::
NP_001 DNEAWNGFVAAAELPRNEADELRKALDNLARQMIMKDKNWHDKGQQYRNWFLKEFPRLKS
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE6 ELEDHIRKLRALAEEVEQVHRGTTIANVVSNSVGTTSGILTLLGLGLAPFTEGISFVLLD
::::.::.:::::. :..::.:::::::::.:.. .::::::.:.:::::::: :.:::.
NP_001 ELEDNIRRLRALADGVQKVHKGTTIANVVSGSLSISSGILTLVGMGLAPFTEGGSLVLLE
140 150 160 170 180 190
160 170 180 190 200 210
pF1KE6 TGMGLGAAAAVAGITCSVVELVNKLRARAQARNLDQSGTNVAKVMKEFVGGNTPNVLTLV
:: :: .::..::: :... .: ..:::..: .. . : ..::.: : : :.:.
NP_001 PGMELGITAALTGITSSTMDYGKKWWTQAQAHDLVIKSLDKLKEVREFLGENISNFLSLA
200 210 220 230 240 250
220 230 240 250 260
pF1KE6 DNWYQVTQGIGRNIRAIRRARANPQL--GAYAPPPHVIGRISAEGGEQVERVVEGPAQAM
: ::.:.:::..:::.:::::: : : : :.: ::::.::::::: : :
NP_001 GNTYQLTRGIGKDIRALRRARANLQSVPHASASRPRVTEPISAESGEQVERVNEPSILEM
260 270 280 290 300 310
270 280 290 300 310 320
pF1KE6 SRGTMIVGAATGGILLLLDVVSLAYESKHLLEGAKSESAEELKKRAQELEGKLNFLTKIH
:::. .. .: ...:.:::: :.:::::: ::::::.:::::: ::::: :::.:.. .
NP_001 SRGVKLTDVAPVSFFLVLDVVYLVYESKHLHEGAKSETAEELKKVAQELEEKLNILNNNY
320 330 340 350 360 370
330
pF1KE6 EMLQPGQDQ
..:: :.
NP_001 KILQADQEL
380
>>XP_005261853 (OMIM: 603743,612551) PREDICTED: apolipop (380 aa)
initn: 1267 init1: 973 opt: 1262 Z-score: 1395.4 bits: 266.7 E(85289): 5.5e-71
Smith-Waterman score: 1262; 61.8% identity (82.8% similar) in 338 aa overlap (1-336:42-379)
10 20 30
pF1KE6 MNPESSIFIEDYLKYFQDQVSRENLLQLLT
:.::::::::: .:::...:: .::: :::
XP_005 LCIWVQQNVPSGTDTGDPQSKPLGDWAAGTMDPESSIFIEDAIKYFKEKVSTQNLLLLLT
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE6 DDEAWNGFVAAAELPRDEADELRKALNKLASHMVMKDKNRHDKDQQHRQWFLKEFPRLKR
:.::::::::::::::.:::::::::..:: .:.::::: ::: ::.:.::::::::::
XP_005 DNEAWNGFVAAAELPRNEADELRKALDNLARQMIMKDKNWHDKGQQYRNWFLKEFPRLKS
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE6 ELEDHIRKLRALAEEVEQVHRGTTIANVVSNSVGTTSGILTLLGLGLAPFTEGISFVLLD
::::.::.:::::. :..::.:::::::::.:.. .::::::.:.:::::::: :.:::.
XP_005 ELEDNIRRLRALADGVQKVHKGTTIANVVSGSLSISSGILTLVGMGLAPFTEGGSLVLLE
140 150 160 170 180 190
160 170 180 190 200 210
pF1KE6 TGMGLGAAAAVAGITCSVVELVNKLRARAQARNLDQSGTNVAKVMKEFVGGNTPNVLTLV
:: :: .::..::: :... .: ..:::..: .. . : ..::.: : : :.:.
XP_005 PGMELGITAALTGITSSTMDYGKKWWTQAQAHDLVIKSLDKLKEVREFLGENISNFLSLA
200 210 220 230 240 250
220 230 240 250 260
pF1KE6 DNWYQVTQGIGRNIRAIRRARANPQL--GAYAPPPHVIGRISAEGGEQVERVVEGPAQAM
: ::.:.:::..:::.:::::: : : : :.: ::::.::::::: : :
XP_005 GNTYQLTRGIGKDIRALRRARANLQSVPHASASRPRVTEPISAESGEQVERVNEPSILEM
260 270 280 290 300 310
270 280 290 300 310 320
pF1KE6 SRGTMIVGAATGGILLLLDVVSLAYESKHLLEGAKSESAEELKKRAQELEGKLNFLTKIH
:::. .. .: ...:.:::: :.:::::: ::::::.:::::: ::::: :::.:.. .
XP_005 SRGVKLTDVAPVSFFLVLDVVYLVYESKHLHEGAKSETAEELKKVAQELEEKLNILNNNY
320 330 340 350 360 370
330
pF1KE6 EMLQPGQDQ
..:: :.
XP_005 KILQADQEL
380
337 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 12:04:52 2016 done: Tue Nov 8 12:04:53 2016
Total Scan time: 5.130 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]