FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6309, 372 aa
  1>>>pF1KE6309 372 - 372 aa - 372 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2366+/-0.00096; mu= 16.2769+/- 0.057
 mean_var=57.6572+/-11.452, 0's: 0 Z-trim(103.2): 24  B-trim: 0 in 0/48
 Lambda= 0.168907
 statistics sampled from 7273 (7281) to 7273 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.591), E-opt: 0.2 (0.224), width:  16
 Scan time:  2.250

The best scores are:                                      opt bits E(32554)
CCDS4474.1 GMDS gene_id:2762|Hs108|chr6            ( 372) 2492 615.8 1.9e-176
CCDS58994.1 GMDS gene_id:2762|Hs108|chr6           ( 342) 2257 558.5  3e-159


>>CCDS4474.1 GMDS gene_id:2762|Hs108|chr6                 (372 aa)
 initn: 2492 init1: 2492 opt: 2492  Z-score: 3281.3  bits: 615.8 E(32554): 1.9e-176
Smith-Waterman score: 2492; 100.0% identity (100.0% similar) in 372 aa overlap (1-372:1-372)

               10        20        30        40        50        60
pF1KE6 MAHAPARCPSARGSGDGEMGKPRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAHAPARCPSARGSGDGEMGKPRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 NTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 AEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 AAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 GNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 KNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVH
              310       320       330       340       350       360

              370  
pF1KE6 ADVELMRTNPNA
       ::::::::::::
CCDS44 ADVELMRTNPNA
              370  

>>CCDS58994.1 GMDS gene_id:2762|Hs108|chr6                (342 aa)
 initn: 2257 init1: 2257 opt: 2257  Z-score: 2972.4  bits: 558.5 E(32554): 3e-159
Smith-Waterman score: 2257; 100.0% identity (100.0% similar) in 338 aa overlap (35-372:5-342)

           10        20        30        40        50        60    
pF1KE6 PARCPSARGSGDGEMGKPRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGR
                                     ::::::::::::::::::::::::::::::
CCDS58                           MCKMDGSYLAEFLLEKGYEVHGIVRRSSSFNTGR
                                         10        20        30    

           70        80        90       100       110       120    
pF1KE6 IEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 IEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYT
           40        50        60        70        80        90    

          130       140       150       160       170       180    
pF1KE6 ADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKL
          100       110       120       130       140       150    

          190       200       210       220       230       240    
pF1KE6 YAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 YAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLD
          160       170       180       190       200       210    

          250       260       270       280       290       300    
pF1KE6 AKRDWGHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 AKRDWGHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNEN
          220       230       240       250       260       270    

          310       320       330       340       350       360    
pF1KE6 EVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVE
          280       290       300       310       320       330    

          370  
pF1KE6 LMRTNPNA
       ::::::::
CCDS58 LMRTNPNA
          340  




372 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:57:46 2016 done: Tue Nov  8 11:57:46 2016
 Total Scan time:  2.250 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]