FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6308, 393 aa
  1>>>pF1KE6308 393 - 393 aa - 393 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6446+/-0.000967; mu= 15.1583+/- 0.058
 mean_var=67.5546+/-13.236, 0's: 0 Z-trim(104.3): 20  B-trim: 2 in 1/49
 Lambda= 0.156044
 statistics sampled from 7843 (7847) to 7843 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.613), E-opt: 0.2 (0.241), width:  16
 Scan time:  2.360

The best scores are:                                      opt bits E(32554)
CCDS9224.1 HPD gene_id:3242|Hs108|chr12            ( 393) 2625 600.1 1.2e-171
CCDS53839.1 HPD gene_id:3242|Hs108|chr12           ( 354) 2357 539.7 1.5e-153
CCDS519.1 HPDL gene_id:84842|Hs108|chr1            ( 371)  345 86.8 3.6e-17


>>CCDS9224.1 HPD gene_id:3242|Hs108|chr12                 (393 aa)
 initn: 2625 init1: 2625 opt: 2625  Z-score: 3195.4  bits: 600.1 E(32554): 1.2e-171
Smith-Waterman score: 2625; 99.7% identity (100.0% similar) in 393 aa overlap (1-393:1-393)

               10        20        30        40        50        60
pF1KE6 MTTYSDKGAKPERGRFLHFHSVTFWVGNAKQAASFYCSKMGFEPLAYRGLETGSREVVSH
       ::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
CCDS92 MTTYSDKGAKPERGRFLHFHSVTFWVGNAKQATSFYCSKMGFEPLAYRGLETGSREVVSH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VIKQGKIVFVLSSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCDYIVQKARERGAKIMRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 VIKQGKIVFVLSSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCDYIVQKARERGAKIMRE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 PWVEQDKFGKVKFAVLQTYGDTTHTLVEKMNYIGQFLPGYEAPAFMDPLLPKLPKCSLEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 PWVEQDKFGKVKFAVLQTYGDTTHTLVEKMNYIGQFLPGYEAPAFMDPLLPKLPKCSLEM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 IDHIVGNQPDQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIVVANYEESIKMPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 IDHIVGNQPDQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIVVANYEESIKMPI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 NEPAPGKKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRERGLEFLSVPSTYYKQLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 NEPAPGKKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRERGLEFLSVPSTYYKQLR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 EKLKTAKIKVKENIDALEELKILVDYDEKGYLLQIFTKPVQDRPTLFLEVIQRHNHQGFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 EKLKTAKIKVKENIDALEELKILVDYDEKGYLLQIFTKPVQDRPTLFLEVIQRHNHQGFG
              310       320       330       340       350       360

              370       380       390   
pF1KE6 AGNFNSLFKAFEEEQNLRGNLTNMETNGVVPGM
       :::::::::::::::::::::::::::::::::
CCDS92 AGNFNSLFKAFEEEQNLRGNLTNMETNGVVPGM
              370       380       390   

>>CCDS53839.1 HPD gene_id:3242|Hs108|chr12                (354 aa)
 initn: 2357 init1: 2357 opt: 2357  Z-score: 2870.0  bits: 539.7 E(32554): 1.5e-153
Smith-Waterman score: 2357; 100.0% identity (100.0% similar) in 354 aa overlap (40-393:1-354)

      10        20        30        40        50        60         
pF1KE6 KPERGRFLHFHSVTFWVGNAKQAASFYCSKMGFEPLAYRGLETGSREVVSHVIKQGKIVF
                                     ::::::::::::::::::::::::::::::
CCDS53                               MGFEPLAYRGLETGSREVVSHVIKQGKIVF
                                             10        20        30

      70        80        90       100       110       120         
pF1KE6 VLSSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCDYIVQKARERGAKIMREPWVEQDKFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VLSSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCDYIVQKARERGAKIMREPWVEQDKFG
               40        50        60        70        80        90

     130       140       150       160       170       180         
pF1KE6 KVKFAVLQTYGDTTHTLVEKMNYIGQFLPGYEAPAFMDPLLPKLPKCSLEMIDHIVGNQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KVKFAVLQTYGDTTHTLVEKMNYIGQFLPGYEAPAFMDPLLPKLPKCSLEMIDHIVGNQP
              100       110       120       130       140       150

     190       200       210       220       230       240         
pF1KE6 DQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIVVANYEESIKMPINEPAPGKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIVVANYEESIKMPINEPAPGKKK
              160       170       180       190       200       210

     250       260       270       280       290       300         
pF1KE6 SQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRERGLEFLSVPSTYYKQLREKLKTAKIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRERGLEFLSVPSTYYKQLREKLKTAKIK
              220       230       240       250       260       270

     310       320       330       340       350       360         
pF1KE6 VKENIDALEELKILVDYDEKGYLLQIFTKPVQDRPTLFLEVIQRHNHQGFGAGNFNSLFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VKENIDALEELKILVDYDEKGYLLQIFTKPVQDRPTLFLEVIQRHNHQGFGAGNFNSLFK
              280       290       300       310       320       330

     370       380       390   
pF1KE6 AFEEEQNLRGNLTNMETNGVVPGM
       ::::::::::::::::::::::::
CCDS53 AFEEEQNLRGNLTNMETNGVVPGM
              340       350    

>>CCDS519.1 HPDL gene_id:84842|Hs108|chr1                 (371 aa)
 initn: 312 init1: 158 opt: 345  Z-score: 421.8  bits: 86.8 E(32554): 3.6e-17
Smith-Waterman score: 369; 26.1% identity (55.1% similar) in 372 aa overlap (17-374:6-364)

               10        20        30        40        50        60
pF1KE6 MTTYSDKGAKPERGRFLHFHSVTFWVGNAKQAASFYCSKMGFEPLAYRGLETGSREVVSH
                       :..  ..: :  ..  :      .::.::: : .. : :..   
CCDS51            MAAPALRLCHIAFHVPAGQPLARNLQRLFGFQPLASREVD-GWRQL---
                          10        20        30        40         

               70        80        90       100       110       120
pF1KE6 VIKQGKIVFVLSSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCDYIVQKARERGAKIMRE
       ....:  ::... . .  .  .:    .   .. .. :.: :    ...    : ..   
CCDS51 ALRSGDAVFLVNEGAGSGEPLYGLDPRHAVPSATNLCFDVADAGAATRELAALGCSVPVP
          50        60        70        80        90       100     

              130        140       150       160       170         
pF1KE6 PWVEQDKFGKVKFAVLQT-YGDTTHTLVEKMNYIGQFLPGYEAPAFMDPLLPKLPKCSLE
       :   .:  : . .::...  :  . ::.:. .: : ::::.. :.   :  :      . 
CCDS51 PVRVRDAQGAATYAVVSSPAGILSLTLLERAGYRGPFLPGFR-PVSSAPG-PGW----VS
         110       120       130       140        150              

     180       190       200        210        220             230 
pF1KE6 MIDHIVGNQPDQEMVSASEWYLKNLQF-HRFWSV-DDTQVHTEYSS------LRSIVVAN
        .::..         .  .:.   : : :   :  .: ..  :...      ::  ..  
CCDS51 RVDHLTLACTPGSSPTLLRWFHDCLGFCHLPLSPGEDPELGLEMTAGFGLGGLRLTALQA
     160       170       180       190       200       210         

               240         250       260       270       280       
pF1KE6 YEESI--KMPINEPAPGK--KKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRERGLE
          ::   . . :  ::   ...:.....  . : :.::..: : .:. : . .   : .
CCDS51 QPGSIVPTLVLAESLPGATTRQDQVEQFLARHKGPGLQHVGLYTPNIVEATEGVATAGGQ
     220       230       240       250       260       270         

       290       300       310        320       330       340      
pF1KE6 FLSVPSTYYKQLREKLKTAKIKVK-ENIDALEELKILVDYDEKGYLLQIFTKPVQDRPTL
       ::. :..::.:     :  .:..  ..   : .  ::.: :.  .:::.::: .  . :.
CCDS51 FLAPPGAYYQQ---PGKERQIRAAGHEPHLLARQGILLDGDKGKFLLQVFTKSLFTEDTF
     280       290          300       310       320       330      

        350       360       370       380       390   
pF1KE6 FLEVIQRHNHQGFGAGNFNSLFKAFEEEQNLRGNLTNMETNGVVPGM
       :::.:::..  ::: ::. .:... .:.                   
CCDS51 FLELIQRQGATGFGQGNIRALWQSVQEQSARSQEA            
        340       350       360       370             




393 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:57:15 2016 done: Tue Nov  8 11:57:16 2016
 Total Scan time:  2.360 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]