Result of FASTA (omim) for
pFN21AE6305
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6305, 410 aa
1>>>pF1KE6305 410 - 410 aa - 410 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6170+/-0.00037; mu= 21.0226+/- 0.023
mean_var=66.9541+/-13.968, 0's: 0 Z-trim(113.4): 11 B-trim: 463 in 1/53
Lambda= 0.156742
statistics sampled from 22672 (22680) to 22672 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.266), width: 16
Scan time: 8.400
The best scores are: opt bits E(85289)
NP_510870 (OMIM: 256000,603646,615119) cytochrome ( 410) 2753 631.6 1.1e-180
NP_001307903 (OMIM: 256000,603646,615119) cytochro ( 388) 2479 569.6 4.6e-162
NP_004367 (OMIM: 256000,603646,615119) cytochrome ( 388) 2479 569.6 4.6e-162
NP_001307904 (OMIM: 256000,603646,615119) cytochro ( 298) 1905 439.7 4.5e-123
XP_006717697 (OMIM: 256000,603646,615119) PREDICTE ( 298) 1905 439.7 4.5e-123
XP_011537600 (OMIM: 256000,603646,615119) PREDICTE ( 298) 1905 439.7 4.5e-123
NP_001307905 (OMIM: 256000,603646,615119) cytochro ( 231) 1512 350.7 2.1e-96
XP_016871204 (OMIM: 256000,603646,615119) PREDICTE ( 209) 1238 288.7 8.7e-78
>>NP_510870 (OMIM: 256000,603646,615119) cytochrome c ox (410 aa)
initn: 2753 init1: 2753 opt: 2753 Z-score: 3365.2 bits: 631.6 E(85289): 1.1e-180
Smith-Waterman score: 2753; 100.0% identity (100.0% similar) in 410 aa overlap (1-410:1-410)
10 20 30 40 50 60
pF1KE6 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_510 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_510 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_510 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_510 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_510 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 IPEDLFTFSPILRNVFENPTMVQFDHRILGITSVTAITVLYFLSRRIPLPRRTKMAAVTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_510 IPEDLFTFSPILRNVFENPTMVQFDHRILGITSVTAITVLYFLSRRIPLPRRTKMAAVTL
310 320 330 340 350 360
370 380 390 400 410
pF1KE6 LALAYTQVGLGISTLLMYVPTPLAATHQSGSLALLTGALWLMNELRRVPK
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_510 LALAYTQVGLGISTLLMYVPTPLAATHQSGSLALLTGALWLMNELRRVPK
370 380 390 400 410
>>NP_001307903 (OMIM: 256000,603646,615119) cytochrome c (388 aa)
initn: 2479 init1: 2479 opt: 2479 Z-score: 3030.6 bits: 569.6 E(85289): 4.6e-162
Smith-Waterman score: 2479; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:1-367)
10 20 30 40 50 60
pF1KE6 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 IPEDLFTFSPILRNVFENPTMVQFDHRILGITSVTAITVLYFLSRRIPLPRRTKMAAVTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPEDLFTFSPILRNVFENPTMVQFDHRILGITSVTAITVLYFLSRRIPLPRRTKMAAVTL
310 320 330 340 350 360
370 380 390 400 410
pF1KE6 LALAYTQVGLGISTLLMYVPTPLAATHQSGSLALLTGALWLMNELRRVPK
:::::::
NP_001 LALAYTQTYYRTELSQKMQLHCNSTNMS
370 380
>>NP_004367 (OMIM: 256000,603646,615119) cytochrome c ox (388 aa)
initn: 2479 init1: 2479 opt: 2479 Z-score: 3030.6 bits: 569.6 E(85289): 4.6e-162
Smith-Waterman score: 2479; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:1-367)
10 20 30 40 50 60
pF1KE6 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 IPEDLFTFSPILRNVFENPTMVQFDHRILGITSVTAITVLYFLSRRIPLPRRTKMAAVTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IPEDLFTFSPILRNVFENPTMVQFDHRILGITSVTAITVLYFLSRRIPLPRRTKMAAVTL
310 320 330 340 350 360
370 380 390 400 410
pF1KE6 LALAYTQVGLGISTLLMYVPTPLAATHQSGSLALLTGALWLMNELRRVPK
:::::::
NP_004 LALAYTQGPVLFNFTFKISDLDEGIRNI
370 380
>>NP_001307904 (OMIM: 256000,603646,615119) cytochrome c (298 aa)
initn: 1905 init1: 1905 opt: 1905 Z-score: 2330.6 bits: 439.7 E(85289): 4.5e-123
Smith-Waterman score: 1905; 100.0% identity (100.0% similar) in 278 aa overlap (1-278:1-278)
10 20 30 40 50 60
pF1KE6 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESW
::::::::::::::::::::::::::::::::::::::
NP_001 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGNHFSHCHYSALLPLSENSPS
250 260 270 280 290
310 320 330 340 350 360
pF1KE6 IPEDLFTFSPILRNVFENPTMVQFDHRILGITSVTAITVLYFLSRRIPLPRRTKMAAVTL
>>XP_006717697 (OMIM: 256000,603646,615119) PREDICTED: c (298 aa)
initn: 1905 init1: 1905 opt: 1905 Z-score: 2330.6 bits: 439.7 E(85289): 4.5e-123
Smith-Waterman score: 1905; 100.0% identity (100.0% similar) in 278 aa overlap (1-278:1-278)
10 20 30 40 50 60
pF1KE6 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESW
::::::::::::::::::::::::::::::::::::::
XP_006 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGNHFSHCHYSALLPLSENSPS
250 260 270 280 290
310 320 330 340 350 360
pF1KE6 IPEDLFTFSPILRNVFENPTMVQFDHRILGITSVTAITVLYFLSRRIPLPRRTKMAAVTL
>>XP_011537600 (OMIM: 256000,603646,615119) PREDICTED: c (298 aa)
initn: 1905 init1: 1905 opt: 1905 Z-score: 2330.6 bits: 439.7 E(85289): 4.5e-123
Smith-Waterman score: 1905; 100.0% identity (100.0% similar) in 278 aa overlap (1-278:1-278)
10 20 30 40 50 60
pF1KE6 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESW
::::::::::::::::::::::::::::::::::::::
XP_011 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGNHFSHCHYSALLPLSENSPS
250 260 270 280 290
310 320 330 340 350 360
pF1KE6 IPEDLFTFSPILRNVFENPTMVQFDHRILGITSVTAITVLYFLSRRIPLPRRTKMAAVTL
>>NP_001307905 (OMIM: 256000,603646,615119) cytochrome c (231 aa)
initn: 1512 init1: 1512 opt: 1512 Z-score: 1851.8 bits: 350.7 E(85289): 2.1e-96
Smith-Waterman score: 1512; 100.0% identity (100.0% similar) in 231 aa overlap (180-410:1-231)
150 160 170 180 190 200
pF1KE6 YSHRMWGRLVGLVYILPAAYFWRKGWLSRGMKGRVLALCGLVCFQGLLGWYMVKSGLEEK
::::::::::::::::::::::::::::::
NP_001 MKGRVLALCGLVCFQGLLGWYMVKSGLEEK
10 20 30
210 220 230 240 250 260
pF1KE6 SDSHDIPRVSQYRLAAHLGSALVLYCASLWTSLSLLLPPHKLPETHQLLQLRRFAHGTAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SDSHDIPRVSQYRLAAHLGSALVLYCASLWTSLSLLLPPHKLPETHQLLQLRRFAHGTAG
40 50 60 70 80 90
270 280 290 300 310 320
pF1KE6 LVFLTALSGAFVAGLDAGLVYNSFPKMGESWIPEDLFTFSPILRNVFENPTMVQFDHRIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVFLTALSGAFVAGLDAGLVYNSFPKMGESWIPEDLFTFSPILRNVFENPTMVQFDHRIL
100 110 120 130 140 150
330 340 350 360 370 380
pF1KE6 GITSVTAITVLYFLSRRIPLPRRTKMAAVTLLALAYTQVGLGISTLLMYVPTPLAATHQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GITSVTAITVLYFLSRRIPLPRRTKMAAVTLLALAYTQVGLGISTLLMYVPTPLAATHQS
160 170 180 190 200 210
390 400 410
pF1KE6 GSLALLTGALWLMNELRRVPK
:::::::::::::::::::::
NP_001 GSLALLTGALWLMNELRRVPK
220 230
>>XP_016871204 (OMIM: 256000,603646,615119) PREDICTED: c (209 aa)
initn: 1238 init1: 1238 opt: 1238 Z-score: 1517.5 bits: 288.7 E(85289): 8.7e-78
Smith-Waterman score: 1238; 100.0% identity (100.0% similar) in 188 aa overlap (180-367:1-188)
150 160 170 180 190 200
pF1KE6 YSHRMWGRLVGLVYILPAAYFWRKGWLSRGMKGRVLALCGLVCFQGLLGWYMVKSGLEEK
::::::::::::::::::::::::::::::
XP_016 MKGRVLALCGLVCFQGLLGWYMVKSGLEEK
10 20 30
210 220 230 240 250 260
pF1KE6 SDSHDIPRVSQYRLAAHLGSALVLYCASLWTSLSLLLPPHKLPETHQLLQLRRFAHGTAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SDSHDIPRVSQYRLAAHLGSALVLYCASLWTSLSLLLPPHKLPETHQLLQLRRFAHGTAG
40 50 60 70 80 90
270 280 290 300 310 320
pF1KE6 LVFLTALSGAFVAGLDAGLVYNSFPKMGESWIPEDLFTFSPILRNVFENPTMVQFDHRIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVFLTALSGAFVAGLDAGLVYNSFPKMGESWIPEDLFTFSPILRNVFENPTMVQFDHRIL
100 110 120 130 140 150
330 340 350 360 370 380
pF1KE6 GITSVTAITVLYFLSRRIPLPRRTKMAAVTLLALAYTQVGLGISTLLMYVPTPLAATHQS
::::::::::::::::::::::::::::::::::::::
XP_016 GITSVTAITVLYFLSRRIPLPRRTKMAAVTLLALAYTQTYYRTELSQKMQLHCNSTNMS
160 170 180 190 200
390 400 410
pF1KE6 GSLALLTGALWLMNELRRVPK
410 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 11:55:52 2016 done: Tue Nov 8 11:55:53 2016
Total Scan time: 8.400 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]