FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6305, 410 aa
  1>>>pF1KE6305 410 - 410 aa - 410 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8410+/-0.000836; mu= 19.7031+/- 0.050
 mean_var=63.7556+/-13.072, 0's: 0 Z-trim(106.6): 10  B-trim: 0 in 0/49
 Lambda= 0.160626
 statistics sampled from 9092 (9095) to 9092 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.279), width:  16
 Scan time:  3.030

The best scores are:                                      opt bits E(32554)
CCDS7482.1 COX15 gene_id:1355|Hs108|chr10          ( 410) 2753 646.7 1.2e-185
CCDS7481.1 COX15 gene_id:1355|Hs108|chr10          ( 388) 2479 583.2 1.5e-166


>>CCDS7482.1 COX15 gene_id:1355|Hs108|chr10               (410 aa)
 initn: 2753 init1: 2753 opt: 2753  Z-score: 3446.6  bits: 646.7 E(32554): 1.2e-185
Smith-Waterman score: 2753; 100.0% identity (100.0% similar) in 410 aa overlap (1-410:1-410)

               10        20        30        40        50        60
pF1KE6 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 IPEDLFTFSPILRNVFENPTMVQFDHRILGITSVTAITVLYFLSRRIPLPRRTKMAAVTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 IPEDLFTFSPILRNVFENPTMVQFDHRILGITSVTAITVLYFLSRRIPLPRRTKMAAVTL
              310       320       330       340       350       360

              370       380       390       400       410
pF1KE6 LALAYTQVGLGISTLLMYVPTPLAATHQSGSLALLTGALWLMNELRRVPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LALAYTQVGLGISTLLMYVPTPLAATHQSGSLALLTGALWLMNELRRVPK
              370       380       390       400       410

>>CCDS7481.1 COX15 gene_id:1355|Hs108|chr10               (388 aa)
 initn: 2479 init1: 2479 opt: 2479  Z-score: 3103.8  bits: 583.2 E(32554): 1.5e-166
Smith-Waterman score: 2479; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:1-367)

               10        20        30        40        50        60
pF1KE6 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 IPEDLFTFSPILRNVFENPTMVQFDHRILGITSVTAITVLYFLSRRIPLPRRTKMAAVTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 IPEDLFTFSPILRNVFENPTMVQFDHRILGITSVTAITVLYFLSRRIPLPRRTKMAAVTL
              310       320       330       340       350       360

              370       380       390       400       410
pF1KE6 LALAYTQVGLGISTLLMYVPTPLAATHQSGSLALLTGALWLMNELRRVPK
       :::::::                                           
CCDS74 LALAYTQGPVLFNFTFKISDLDEGIRNI                      
              370       380                              




410 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:55:51 2016 done: Tue Nov  8 11:55:52 2016
 Total Scan time:  3.030 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]