FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6286, 290 aa
  1>>>pF1KE6286 290 - 290 aa - 290 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2610+/-0.000464; mu= 10.1184+/- 0.029
 mean_var=76.3873+/-15.789, 0's: 0 Z-trim(109.6): 23  B-trim: 1025 in 1/48
 Lambda= 0.146745
 statistics sampled from 17766 (17768) to 17766 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.576), E-opt: 0.2 (0.208), width:  16
 Scan time:  5.670

The best scores are:                                      opt bits E(85289)
NP_005990 (OMIM: 602964) translin-associated prote ( 290) 1890 409.9 2.9e-114
NP_004613 (OMIM: 600575) translin isoform 1 [Homo  ( 228)  171 46.0 8.2e-05


>>NP_005990 (OMIM: 602964) translin-associated protein X  (290 aa)
 initn: 1890 init1: 1890 opt: 1890  Z-score: 2172.5  bits: 409.9 E(85289): 2.9e-114
Smith-Waterman score: 1890; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290)

               10        20        30        40        50        60
pF1KE6 MSNKEGSGGFRKRKHDNFPHNQRREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MSNKEGSGGFRKRKHDNFPHNQRREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 RDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQVAQELSGEDMHQFHRAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQVAQELSGEDMHQFHRAI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 TTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 RVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFIGNTGPYEVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFIGNTGPYEVS
              190       200       210       220       230       240

              250       260       270       280       290
pF1KE6 KKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFSVKTEMIDQEEGIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFSVKTEMIDQEEGIS
              250       260       270       280       290

>>NP_004613 (OMIM: 600575) translin isoform 1 [Homo sapi  (228 aa)
 initn: 188 init1: 126 opt: 171  Z-score: 207.4  bits: 46.0 E(85289): 8.2e-05
Smith-Waterman score: 228; 25.8% identity (59.4% similar) in 229 aa overlap (39-264:7-216)

       10        20        30        40        50        60        
pF1KE6 GFRKRKHDNFPHNQRREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESK
                                     :  .:  : :..:  :.. :. ...   ..
NP_004                         MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAR
                                       10        20        30      

       70        80           90       100       110       120     
pF1KE6 RTIFLLHRITSAPDMEDI---LTESEIKLDGVRQKIFQVAQELSGEDMHQFHRAITTGLQ
       . . ::. . ..  ..::     ... ..  :. .. ..  .. .:....::.     ::
NP_004 EILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQ
         40        50        60        70        80        90      

         130       140       150       160       170       180     
pF1KE6 EYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRLRVTPV
       . :  ..:  ...:..:.. . ... :       : :   :     :.. : ..: :   
NP_004 RLVFLAAFVVYLETETLVTREAVTEIL-------GIE---P-----DREKG-FHLDVE--
        100       110       120                      130           

         190       200       210       220       230       240     
pF1KE6 DYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFIGNTGPYEVSKKLYT
       ::: ::  :..:: :. .:::  :: . :...: :. .. .:: .. :     . :.   
NP_004 DYLSGVLILASELSRLSVNSVTAGDYSRPLHISTFINELDSGFRLL-NLKNDSLRKRYDG
      140       150       160       170       180        190       

         250       260       270       280       290
pF1KE6 LKQSLAKVENACYALKVRGSEIPKHMLADVFSVKTEMIDQEEGIS
       :: .. :::.. : :..::                          
NP_004 LKYDVKKVEEVVYDLSIRGFNKETAAACVEK              
       200       210       220                      




290 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:47:40 2016 done: Tue Nov  8 11:47:41 2016
 Total Scan time:  5.670 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]