FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6282, 256 aa
  1>>>pF1KE6282 256 - 256 aa - 256 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4051+/-0.000874; mu= 9.6718+/- 0.053
 mean_var=85.7594+/-17.369, 0's: 0 Z-trim(107.7): 7  B-trim: 3 in 1/51
 Lambda= 0.138495
 statistics sampled from 9739 (9741) to 9739 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.299), width:  16
 Scan time:  2.000

The best scores are:                                      opt bits E(32554)
CCDS836.1 ATP5F1 gene_id:515|Hs108|chr1            ( 256) 1643 337.8 4.3e-93


>>CCDS836.1 ATP5F1 gene_id:515|Hs108|chr1                 (256 aa)
 initn: 1643 init1: 1643 opt: 1643  Z-score: 1784.8  bits: 337.8 E(32554): 4.3e-93
Smith-Waterman score: 1643; 100.0% identity (100.0% similar) in 256 aa overlap (1-256:1-256)

               10        20        30        40        50        60
pF1KE6 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVYGIKKYGPFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVYGIKKYGPFV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 ADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALEV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 TYRERLYRVYKEVKNRLDYHISVQNMMRRKEQEHMINWVEKHVVQSISTQQEKETIAKCI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 TYRERLYRVYKEVKNRLDYHISVQNMMRRKEQEHMINWVEKHVVQSISTQQEKETIAKCI
              190       200       210       220       230       240

              250      
pF1KE6 ADLKLLAKKAQAQPVM
       ::::::::::::::::
CCDS83 ADLKLLAKKAQAQPVM
              250      




256 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:45:18 2016 done: Tue Nov  8 11:45:19 2016
 Total Scan time:  2.000 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]