FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6263, 188 aa
  1>>>pF1KE6263 188 - 188 aa - 188 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0559+/-0.000658; mu= 14.1134+/- 0.040
 mean_var=59.6313+/-11.734, 0's: 0 Z-trim(109.6): 8  B-trim: 0 in 0/53
 Lambda= 0.166087
 statistics sampled from 10972 (10975) to 10972 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.337), width:  16
 Scan time:  1.570

The best scores are:                                      opt bits E(32554)
CCDS4710.1 APOM gene_id:55937|Hs108|chr6           ( 188) 1301 319.5 7.5e-88
CCDS59004.1 APOM gene_id:55937|Hs108|chr6          ( 116)  801 199.6 5.8e-52


>>CCDS4710.1 APOM gene_id:55937|Hs108|chr6                (188 aa)
 initn: 1301 init1: 1301 opt: 1301  Z-score: 1690.7  bits: 319.5 E(32554): 7.5e-88
Smith-Waterman score: 1301; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KE6 MFHQIWAALLYFYGIILNSIYQCPEHSQLTTLGVDGKEFPEVHLGQWYFIAGAAPTKEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MFHQIWAALLYFYGIILNSIYQCPEHSQLTTLGVDGKEFPEVHLGQWYFIAGAAPTKEEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 ATFDPVDNIVFNMAAGSAPMQLHLRATIRMKDGLCVPRKWIYHLTEGSTDLRTEGRPDMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ATFDPVDNIVFNMAAGSAPMQLHLRATIRMKDGLCVPRKWIYHLTEGSTDLRTEGRPDMK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 TELFSSSCPGGIMLNETGQGYQRFLLYNRSPHPPEKCVEEFKSLTSCLDSKAFLLTPRNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TELFSSSCPGGIMLNETGQGYQRFLLYNRSPHPPEKCVEEFKSLTSCLDSKAFLLTPRNQ
              130       140       150       160       170       180

               
pF1KE6 EACELSNN
       ::::::::
CCDS47 EACELSNN
               

>>CCDS59004.1 APOM gene_id:55937|Hs108|chr6               (116 aa)
 initn: 801 init1: 801 opt: 801  Z-score: 1046.4  bits: 199.6 E(32554): 5.8e-52
Smith-Waterman score: 801; 100.0% identity (100.0% similar) in 116 aa overlap (73-188:1-116)

             50        60        70        80        90       100  
pF1KE6 HLGQWYFIAGAAPTKEELATFDPVDNIVFNMAAGSAPMQLHLRATIRMKDGLCVPRKWIY
                                     ::::::::::::::::::::::::::::::
CCDS59                               MAAGSAPMQLHLRATIRMKDGLCVPRKWIY
                                             10        20        30

            110       120       130       140       150       160  
pF1KE6 HLTEGSTDLRTEGRPDMKTELFSSSCPGGIMLNETGQGYQRFLLYNRSPHPPEKCVEEFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 HLTEGSTDLRTEGRPDMKTELFSSSCPGGIMLNETGQGYQRFLLYNRSPHPPEKCVEEFK
               40        50        60        70        80        90

            170       180        
pF1KE6 SLTSCLDSKAFLLTPRNQEACELSNN
       ::::::::::::::::::::::::::
CCDS59 SLTSCLDSKAFLLTPRNQEACELSNN
              100       110      




188 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:35:44 2016 done: Tue Nov  8 11:35:44 2016
 Total Scan time:  1.570 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]