FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6261, 247 aa
  1>>>pF1KE6261 247 - 247 aa - 247 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5748+/-0.000489; mu= 9.5884+/- 0.030
 mean_var=118.6888+/-23.261, 0's: 0 Z-trim(111.7): 23  B-trim: 0 in 0/54
 Lambda= 0.117725
 statistics sampled from 20420 (20425) to 20420 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.585), E-opt: 0.2 (0.239), width:  16
 Scan time:  6.650

The best scores are:                                      opt bits E(85289)
NP_057078 (OMIM: 609398) V-type proton ATPase subu ( 247) 1507 267.0 2.3e-71


>>NP_057078 (OMIM: 609398) V-type proton ATPase subunit   (247 aa)
 initn: 1507 init1: 1507 opt: 1507  Z-score: 1402.4  bits: 267.0 E(85289): 2.3e-71
Smith-Waterman score: 1507; 99.6% identity (99.6% similar) in 247 aa overlap (1-247:1-247)

               10        20        30        40        50        60
pF1KE6 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VMREAAFSLAEAMFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 ERTLAYIITELDEREREEFYRLKKIQEKKKILKEKSEKDLEQRRAAGEVLEPANLLAEEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 ERTLAYIITELDEREREEFYRLKKIQEKKKILKEKSEKDLEQRRAAGEVLEPANLLAEEK
              190       200       210       220       230       240

              
pF1KE6 DEDLLFE
       :::::::
NP_057 DEDLLFE
              




247 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:34:42 2016 done: Tue Nov  8 11:34:43 2016
 Total Scan time:  6.650 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]