FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6259, 241 aa
  1>>>pF1KE6259 241 - 241 aa - 241 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6288+/-0.000353; mu= 12.6924+/- 0.022
 mean_var=69.7065+/-13.675, 0's: 0 Z-trim(113.6): 4  B-trim: 42 in 1/51
 Lambda= 0.153616
 statistics sampled from 23043 (23045) to 23043 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.27), width:  16
 Scan time:  5.310

The best scores are:                                      opt bits E(85289)
NP_065696 (OMIM: 613125) nuclear receptor-interact ( 241) 1569 356.6 2.2e-98


>>NP_065696 (OMIM: 613125) nuclear receptor-interacting   (241 aa)
 initn: 1569 init1: 1569 opt: 1569  Z-score: 1887.3  bits: 356.6 E(85289): 2.2e-98
Smith-Waterman score: 1569; 100.0% identity (100.0% similar) in 241 aa overlap (1-241:1-241)

               10        20        30        40        50        60
pF1KE6 MFYSGLLTEGGRKETDMREAASLRQQRRMKQAVQFIHKDSADLLPLDGLKKLGSSKDMQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MFYSGLLTEGGRKETDMREAASLRQQRRMKQAVQFIHKDSADLLPLDGLKKLGSSKDMQP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 HNILQRRLMETNLSKLRSGPRVPWASKTNKLNQAKSEGLKKSEEDDMILVSCQCAGKDVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 HNILQRRLMETNLSKLRSGPRVPWASKTNKLNQAKSEGLKKSEEDDMILVSCQCAGKDVK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 ALVDTGCLYNLISLACVDRLGLKEHVKSHKHEGEKLSLPRHLKVVGQIEHLVITLGSLRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 ALVDTGCLYNLISLACVDRLGLKEHVKSHKHEGEKLSLPRHLKVVGQIEHLVITLGSLRL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 DCPAAVVDDNEKNLSLGLQTLRSLKCIINLDKHRLIMGKTDKEEIPFVETVSLNEDNTSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 DCPAAVVDDNEKNLSLGLQTLRSLKCIINLDKHRLIMGKTDKEEIPFVETVSLNEDNTSE
              190       200       210       220       230       240

        
pF1KE6 A
       :
NP_065 A
        




241 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:33:40 2016 done: Tue Nov  8 11:33:41 2016
 Total Scan time:  5.310 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]