FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6256, 209 aa
  1>>>pF1KE6256 209 - 209 aa - 209 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3001+/-0.00085; mu= 13.1587+/- 0.051
 mean_var=56.1562+/-11.370, 0's: 0 Z-trim(105.3): 14  B-trim: 171 in 1/48
 Lambda= 0.171149
 statistics sampled from 8319 (8327) to 8319 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.256), width:  16
 Scan time:  1.260

The best scores are:                                      opt bits E(32554)
CCDS9136.1 GLTP gene_id:51228|Hs108|chr12          ( 209) 1379 348.5 1.8e-96
CCDS56473.1 PLEKHA8 gene_id:84725|Hs108|chr7       ( 519)  364 98.0 1.1e-20
CCDS75574.1 PLEKHA8 gene_id:84725|Hs108|chr7       ( 459)  309 84.4 1.2e-16
CCDS5424.1 PLEKHA8 gene_id:84725|Hs108|chr7        ( 440)  255 71.0 1.2e-12


>>CCDS9136.1 GLTP gene_id:51228|Hs108|chr12               (209 aa)
 initn: 1379 init1: 1379 opt: 1379  Z-score: 1845.5  bits: 348.5 E(32554): 1.8e-96
Smith-Waterman score: 1379; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)

               10        20        30        40        50        60
pF1KE6 MALLAEHLLKPLPADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MALLAEHLLKPLPADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 DTNPAKFRTLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 DTNPAKFRTLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 PNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEEECLEKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 PNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEEECLEKI
              130       140       150       160       170       180

              190       200         
pF1KE6 RLFLVNYTATIDVIYEMYTQMNAELNYKV
       :::::::::::::::::::::::::::::
CCDS91 RLFLVNYTATIDVIYEMYTQMNAELNYKV
              190       200         

>>CCDS56473.1 PLEKHA8 gene_id:84725|Hs108|chr7            (519 aa)
 initn: 352 init1: 142 opt: 364  Z-score: 484.6  bits: 98.0 E(32554): 1.1e-20
Smith-Waterman score: 364; 36.5% identity (62.0% similar) in 192 aa overlap (15-198:327-511)

                               10        20        30        40    
pF1KE6                 MALLAEHLLKPLPADKQIETGPFLEAVSHLPPFFDCLGSPVFTP
                                     :. : :  :: .   . : .: ::  ::.:
CCDS56 PECLWEEGKEVIPTFFSTMNTSFSDIELLEDSGIPTEAFLASCYAVVPVLDKLGPTVFAP
        300       310       320       330       340       350      

           50        60        70        80        90       100    
pF1KE6 IKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFI
       .: :. ::: :..  : ::  .: :::.:.  : :   :.  . .:: ::.::::::.:.
CCDS56 VKMDLVGNIKKVNQKYITNKEEFTTLQKIVLHEVEADVAQV-RNSATEALLWLKRGLKFL
        360       370       380       390        400       410     

          110       120       130       140       150       160    
pF1KE6 QVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKA
       . ::  . .::.:      :..  ..::  .:...:::.:. .:  :: :::   ::. :
CCDS56 KGFLTEVKNGEKD------IQTALNNAYGKTLRQHHGWVVRGVFALALRAAPSYEDFVAA
         420             430       440       450       460         

          170            180          190       200         
pF1KE6 LSKGQNVTEEECL-----EKIRLFLVNYT---ATIDVIYEMYTQMNAELNYKV
       :.  ..  ..: .     . . :.:  .    : .:..::..           
CCDS56 LTVKEGDHQKEAFSIGMQRDLSLYLPAMEKQLAILDTLYEVHGLESDEVV   
     470       480       490       500       510            

>>CCDS75574.1 PLEKHA8 gene_id:84725|Hs108|chr7            (459 aa)
 initn: 303 init1: 142 opt: 309  Z-score: 412.1  bits: 84.4 E(32554): 1.2e-16
Smith-Waterman score: 309; 40.3% identity (64.9% similar) in 134 aa overlap (15-148:327-453)

                               10        20        30        40    
pF1KE6                 MALLAEHLLKPLPADKQIETGPFLEAVSHLPPFFDCLGSPVFTP
                                     :. : :  :: .   . : .: ::  ::.:
CCDS75 PECLWEEGKEVIPTFFSTMNTSFSDIELLEDSGIPTEAFLASCYAVVPVLDKLGPTVFAP
        300       310       320       330       340       350      

           50        60        70        80        90       100    
pF1KE6 IKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFI
       .: :. ::: :..  : ::  .: :::.:.  : :   :.  . .:: ::.::::::.:.
CCDS75 VKMDLVGNIKKVNQKYITNKEEFTTLQKIVLHEVEADVAQV-RNSATEALLWLKRGLKFL
        360       370       380       390        400       410     

          110       120       130       140       150       160    
pF1KE6 QVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKA
       . ::  . .::.:      :..  ..::  .:...:::.:. .:                
CCDS75 KGFLTEVKNGEKD------IQTALNNAYGKTLRQHHGWVVRGVFAGHTNV          
         420             430       440       450                   

          170       180       190       200         
pF1KE6 LSKGQNVTEEECLEKIRLFLVNYTATIDVIYEMYTQMNAELNYKV

>>CCDS5424.1 PLEKHA8 gene_id:84725|Hs108|chr7             (440 aa)
 initn: 244 init1: 142 opt: 255  Z-score: 340.3  bits: 71.0 E(32554): 1.2e-12
Smith-Waterman score: 255; 43.7% identity (65.0% similar) in 103 aa overlap (15-117:327-428)

                               10        20        30        40    
pF1KE6                 MALLAEHLLKPLPADKQIETGPFLEAVSHLPPFFDCLGSPVFTP
                                     :. : :  :: .   . : .: ::  ::.:
CCDS54 PECLWEEGKEVIPTFFSTMNTSFSDIELLEDSGIPTEAFLASCYAVVPVLDKLGPTVFAP
        300       310       320       330       340       350      

           50        60        70        80        90       100    
pF1KE6 IKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFI
       .: :. ::: :..  : ::  .: :::.:.  : :   :.  . .:: ::.::::::.:.
CCDS54 VKMDLVGNIKKVNQKYITNKEEFTTLQKIVLHEVEADVAQV-RNSATEALLWLKRGLKFL
        360       370       380       390        400       410     

          110       120       130       140       150       160    
pF1KE6 QVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKA
       . ::  . .::.:                                               
CCDS54 KGFLTEVKNGEKDIQTALRNPTENT                                   
         420       430       440                                   




209 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:31:52 2016 done: Tue Nov  8 11:31:52 2016
 Total Scan time:  1.260 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]