FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6255, 226 aa
  1>>>pF1KE6255 226 - 226 aa - 226 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3748+/-0.00115; mu= 4.5471+/- 0.069
 mean_var=111.9817+/-22.340, 0's: 0 Z-trim(104.8): 20  B-trim: 0 in 0/51
 Lambda= 0.121199
 statistics sampled from 8064 (8068) to 8064 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.615), E-opt: 0.2 (0.248), width:  16
 Scan time:  1.650

The best scores are:                                      opt bits E(32554)
CCDS1826.1 ATP6V1E2 gene_id:90423|Hs108|chr2       ( 226) 1397 255.0 2.9e-68
CCDS13745.1 ATP6V1E1 gene_id:529|Hs108|chr22       ( 226) 1080 199.5 1.4e-51
CCDS42977.1 ATP6V1E1 gene_id:529|Hs108|chr22       ( 204)  898 167.7 4.9e-42
CCDS42978.1 ATP6V1E1 gene_id:529|Hs108|chr22       ( 196)  523 102.1 2.6e-22


>>CCDS1826.1 ATP6V1E2 gene_id:90423|Hs108|chr2            (226 aa)
 initn: 1397 init1: 1397 opt: 1397  Z-score: 1339.0  bits: 255.0 E(32554): 2.9e-68
Smith-Waterman score: 1397; 99.6% identity (99.6% similar) in 226 aa overlap (1-226:1-226)

               10        20        30        40        50        60
pF1KE6 MALRDVDVKKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK
       ::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MALSDVDVKKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 EKQIEQQKKILMSTMRNQARLKVLRARNDLISDLLSEAKLRLSRIVEDPEVYQGLLDKLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 EKQIEQQKKILMSTMRNQARLKVLRARNDLISDLLSEAKLRLSRIVEDPEVYQGLLDKLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LQGLLRLLEPVMIVRCRPQDLLLVEAAVQKAIPEYMTISQKHVEVQIDKEAYLAVNAAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 LQGLLRLLEPVMIVRCRPQDLLLVEAAVQKAIPEYMTISQKHVEVQIDKEAYLAVNAAGG
              130       140       150       160       170       180

              190       200       210       220      
pF1KE6 VEVYSGNQRIKVSNTLESRLDLSAKQKMPEIRMALFGANTNRKFFI
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 VEVYSGNQRIKVSNTLESRLDLSAKQKMPEIRMALFGANTNRKFFI
              190       200       210       220      

>>CCDS13745.1 ATP6V1E1 gene_id:529|Hs108|chr22            (226 aa)
 initn: 1097 init1: 1080 opt: 1080  Z-score: 1039.4  bits: 199.5 E(32554): 1.4e-51
Smith-Waterman score: 1080; 76.4% identity (89.3% similar) in 225 aa overlap (1-225:1-225)

               10        20        30        40        50        60
pF1KE6 MALRDVDVKKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK
       ::: :.::.:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 EKQIEQQKKILMSTMRNQARLKVLRARNDLISDLLSEAKLRLSRIVEDPEVYQGLLDKLV
       :::::::::: ::.. :::::::::::.:::.:::.::: :::..:.:   :: ::: ::
CCDS13 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LQGLLRLLEPVMIVRCRPQDLLLVEAAVQKAIPEYMTISQKHVEVQIDKEAYLAVNAAGG
       :::: .:::: :::::: ::. ::.:::::::: :   ... :.::::.:.::  . :::
CCDS13 LQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGG
              130       140       150       160       170       180

              190       200       210       220      
pF1KE6 VEVYSGNQRIKVSNTLESRLDLSAKQKMPEIRMALFGANTNRKFFI
       ::.:.:...::::::::::::: :.: :::.: ::::::.::::. 
CCDS13 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD
              190       200       210       220      

>>CCDS42977.1 ATP6V1E1 gene_id:529|Hs108|chr22            (204 aa)
 initn: 955 init1: 891 opt: 898  Z-score: 868.1  bits: 167.7 E(32554): 4.9e-42
Smith-Waterman score: 898; 72.1% identity (87.8% similar) in 197 aa overlap (29-225:7-203)

               10        20        30        40        50        60
pF1KE6 MALRDVDVKKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK
                                   ... .:::::::::::::::::::::::::::
CCDS42                       MALSDADVQKQAEEEFNIEKGRLVQTQRLKIMEYYEKK
                                     10        20        30        

               70        80        90       100       110       120
pF1KE6 EKQIEQQKKILMSTMRNQARLKVLRARNDLISDLLSEAKLRLSRIVEDPEVYQGLLDKLV
       :::::::::: ::.. :::::::::::.:::.:::.::: :::..:.:   :: ::: ::
CCDS42 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV
       40        50        60        70        80        90        

              130       140       150       160       170       180
pF1KE6 LQGLLRLLEPVMIVRCRPQDLLLVEAAVQKAIPEYMTISQKHVEVQIDKEAYLAVNAAGG
       :::: .:::: :::::: ::. ::.:::::::: :   ... :.::::.:.::  . :::
CCDS42 LQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGG
      100       110       120       130       140       150        

              190       200       210       220      
pF1KE6 VEVYSGNQRIKVSNTLESRLDLSAKQKMPEIRMALFGANTNRKFFI
       ::.:.:...::::::::::::: :.: :::.: ::::::.::::. 
CCDS42 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD
      160       170       180       190       200    

>>CCDS42978.1 ATP6V1E1 gene_id:529|Hs108|chr22            (196 aa)
 initn: 954 init1: 522 opt: 523  Z-score: 514.0  bits: 102.1 E(32554): 2.6e-22
Smith-Waterman score: 894; 67.6% identity (78.7% similar) in 225 aa overlap (1-225:1-195)

               10        20        30        40        50        60
pF1KE6 MALRDVDVKKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK
       ::: :.::.:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 EKQIEQQKKILMSTMRNQARLKVLRARNDLISDLLSEAKLRLSRIVEDPEVYQGLLDKLV
       :::::::::: ::.. :::::::::::.:::.                            
CCDS42 EKQIEQQKKIQMSNLMNQARLKVLRARDDLIT----------------------------
               70        80        90                              

              130       140       150       160       170       180
pF1KE6 LQGLLRLLEPVMIVRCRPQDLLLVEAAVQKAIPEYMTISQKHVEVQIDKEAYLAVNAAGG
         :: .:::: :::::: ::. ::.:::::::: :   ... :.::::.:.::  . :::
CCDS42 --GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGG
              100       110       120       130       140       150

              190       200       210       220      
pF1KE6 VEVYSGNQRIKVSNTLESRLDLSAKQKMPEIRMALFGANTNRKFFI
       ::.:.:...::::::::::::: :.: :::.: ::::::.::::. 
CCDS42 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD
              160       170       180       190      




226 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:30:56 2016 done: Tue Nov  8 11:30:57 2016
 Total Scan time:  1.650 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]