FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6248, 213 aa
  1>>>pF1KE6248 213 - 213 aa - 213 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9415+/-0.000335; mu= 7.0306+/- 0.021
 mean_var=121.7451+/-24.197, 0's: 0 Z-trim(118.2): 4  B-trim: 582 in 1/54
 Lambda= 0.116238
 statistics sampled from 30839 (30843) to 30839 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.362), width:  16
 Scan time:  5.140

The best scores are:                                      opt bits E(85289)
XP_016869449 (OMIM: 605772) PREDICTED: receptor-bi ( 213) 1410 246.8   2e-65
NP_001265867 (OMIM: 605772) receptor-binding cance ( 213) 1410 246.8   2e-65
NP_936056 (OMIM: 605772) receptor-binding cancer a ( 213) 1410 246.8   2e-65
NP_004206 (OMIM: 605772) receptor-binding cancer a ( 213) 1410 246.8   2e-65


>>XP_016869449 (OMIM: 605772) PREDICTED: receptor-bindin  (213 aa)
 initn: 1410 init1: 1410 opt: 1410  Z-score: 1295.7  bits: 246.8 E(85289): 2e-65
Smith-Waterman score: 1410; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KE6 MAITQFRLFKFCTCLATVFSFLKRLICRSGRGRKLSGDQITLPTTVDYSSVPKQTDVEEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAITQFRLFKFCTCLATVFSFLKRLICRSGRGRKLSGDQITLPTTVDYSSVPKQTDVEEW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 TSWDEDAPTSVKIEGGNGNVATQQNSLEQLEPDYFKDMTPTIRKTQKIVIKKREPLNFGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSWDEDAPTSVKIEGGNGNVATQQNSLEQLEPDYFKDMTPTIRKTQKIVIKKREPLNFGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 PDGSTGFSSRLAATQDLPFIHQSSELGDLDTWQENTNAWEEEEDAAWQAEEVLRQQKLAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PDGSTGFSSRLAATQDLPFIHQSSELGDLDTWQENTNAWEEEEDAAWQAEEVLRQQKLAD
              130       140       150       160       170       180

              190       200       210   
pF1KE6 REKRAAEQQRKKMEKEAQRLMKKEQNKIGVKLS
       :::::::::::::::::::::::::::::::::
XP_016 REKRAAEQQRKKMEKEAQRLMKKEQNKIGVKLS
              190       200       210   

>>NP_001265867 (OMIM: 605772) receptor-binding cancer an  (213 aa)
 initn: 1410 init1: 1410 opt: 1410  Z-score: 1295.7  bits: 246.8 E(85289): 2e-65
Smith-Waterman score: 1410; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KE6 MAITQFRLFKFCTCLATVFSFLKRLICRSGRGRKLSGDQITLPTTVDYSSVPKQTDVEEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAITQFRLFKFCTCLATVFSFLKRLICRSGRGRKLSGDQITLPTTVDYSSVPKQTDVEEW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 TSWDEDAPTSVKIEGGNGNVATQQNSLEQLEPDYFKDMTPTIRKTQKIVIKKREPLNFGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSWDEDAPTSVKIEGGNGNVATQQNSLEQLEPDYFKDMTPTIRKTQKIVIKKREPLNFGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 PDGSTGFSSRLAATQDLPFIHQSSELGDLDTWQENTNAWEEEEDAAWQAEEVLRQQKLAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDGSTGFSSRLAATQDLPFIHQSSELGDLDTWQENTNAWEEEEDAAWQAEEVLRQQKLAD
              130       140       150       160       170       180

              190       200       210   
pF1KE6 REKRAAEQQRKKMEKEAQRLMKKEQNKIGVKLS
       :::::::::::::::::::::::::::::::::
NP_001 REKRAAEQQRKKMEKEAQRLMKKEQNKIGVKLS
              190       200       210   

>>NP_936056 (OMIM: 605772) receptor-binding cancer antig  (213 aa)
 initn: 1410 init1: 1410 opt: 1410  Z-score: 1295.7  bits: 246.8 E(85289): 2e-65
Smith-Waterman score: 1410; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KE6 MAITQFRLFKFCTCLATVFSFLKRLICRSGRGRKLSGDQITLPTTVDYSSVPKQTDVEEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_936 MAITQFRLFKFCTCLATVFSFLKRLICRSGRGRKLSGDQITLPTTVDYSSVPKQTDVEEW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 TSWDEDAPTSVKIEGGNGNVATQQNSLEQLEPDYFKDMTPTIRKTQKIVIKKREPLNFGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_936 TSWDEDAPTSVKIEGGNGNVATQQNSLEQLEPDYFKDMTPTIRKTQKIVIKKREPLNFGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 PDGSTGFSSRLAATQDLPFIHQSSELGDLDTWQENTNAWEEEEDAAWQAEEVLRQQKLAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_936 PDGSTGFSSRLAATQDLPFIHQSSELGDLDTWQENTNAWEEEEDAAWQAEEVLRQQKLAD
              130       140       150       160       170       180

              190       200       210   
pF1KE6 REKRAAEQQRKKMEKEAQRLMKKEQNKIGVKLS
       :::::::::::::::::::::::::::::::::
NP_936 REKRAAEQQRKKMEKEAQRLMKKEQNKIGVKLS
              190       200       210   

>>NP_004206 (OMIM: 605772) receptor-binding cancer antig  (213 aa)
 initn: 1410 init1: 1410 opt: 1410  Z-score: 1295.7  bits: 246.8 E(85289): 2e-65
Smith-Waterman score: 1410; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KE6 MAITQFRLFKFCTCLATVFSFLKRLICRSGRGRKLSGDQITLPTTVDYSSVPKQTDVEEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAITQFRLFKFCTCLATVFSFLKRLICRSGRGRKLSGDQITLPTTVDYSSVPKQTDVEEW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 TSWDEDAPTSVKIEGGNGNVATQQNSLEQLEPDYFKDMTPTIRKTQKIVIKKREPLNFGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TSWDEDAPTSVKIEGGNGNVATQQNSLEQLEPDYFKDMTPTIRKTQKIVIKKREPLNFGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 PDGSTGFSSRLAATQDLPFIHQSSELGDLDTWQENTNAWEEEEDAAWQAEEVLRQQKLAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PDGSTGFSSRLAATQDLPFIHQSSELGDLDTWQENTNAWEEEEDAAWQAEEVLRQQKLAD
              130       140       150       160       170       180

              190       200       210   
pF1KE6 REKRAAEQQRKKMEKEAQRLMKKEQNKIGVKLS
       :::::::::::::::::::::::::::::::::
NP_004 REKRAAEQQRKKMEKEAQRLMKKEQNKIGVKLS
              190       200       210   




213 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:26:44 2016 done: Tue Nov  8 11:26:45 2016
 Total Scan time:  5.140 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]